ruvector/docs/gnn/ruvector-gnn-node-bindings.md
rUv 4d5d3bb092 feat(micro-hnsw-wasm): Add Neuromorphic HNSW v2.3 with SNN Integration (#40)
* docs: Add comprehensive GNN v2 implementation plans

Add 22 detailed planning documents for 19 advanced GNN features:

Tier 1 (Immediate - 3-6 months):
- GNN-Guided HNSW Routing (+25% QPS)
- Incremental Graph Learning/ATLAS (10-100x faster updates)
- Neuro-Symbolic Query Execution (hybrid neural + logical)

Tier 2 (Medium-Term - 6-12 months):
- Hyperbolic Embeddings (Poincaré ball model)
- Degree-Aware Adaptive Precision (2-4x memory reduction)
- Continuous-Time Dynamic GNN (concept drift detection)

Tier 3 (Research - 12+ months):
- Graph Condensation (10-100x smaller graphs)
- Native Sparse Attention (8-15x GPU speedup)
- Quantum-Inspired Attention (long-range dependencies)

Novel Innovations (10 experimental features):
- Gravitational Embedding Fields, Causal Attention Networks
- Topology-Aware Gradient Routing, Embedding Crystallization
- Semantic Holography, Entangled Subspace Attention
- Predictive Prefetch Attention, Morphological Attention
- Adversarial Robustness Layer, Consensus Attention

Includes comprehensive regression prevention strategy with:
- Feature flag system for safe rollout
- Performance baseline (186 tests + 6 search_v2 tests)
- Automated rollback mechanisms

Related to #38

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

* feat(micro-hnsw-wasm): Add neuromorphic HNSW v2.3 with SNN integration

## New Crate: micro-hnsw-wasm v2.3.0
- Published to crates.io: https://crates.io/crates/micro-hnsw-wasm
- 11.8KB WASM binary with 58 exported functions
- Neuromorphic vector search combining HNSW + Spiking Neural Networks

### Core Features
- HNSW graph-based approximate nearest neighbor search
- Multi-distance metrics: L2, Cosine, Dot product
- GNN extensions: typed nodes, edge weights, neighbor aggregation
- Multi-core sharding: 256 cores × 32 vectors = 8K total

### Spiking Neural Network (SNN)
- LIF (Leaky Integrate-and-Fire) neurons with membrane dynamics
- STDP (Spike-Timing Dependent Plasticity) learning
- Spike propagation through graph topology
- HNSW→SNN bridge for similarity-driven neural activation

### Novel Neuromorphic Features (v2.3)
- Spike-Timing Vector Encoding (rate-to-time conversion)
- Homeostatic Plasticity (self-stabilizing thresholds)
- Oscillatory Resonance (40Hz gamma synchronization)
- Winner-Take-All Circuits (competitive selection)
- Dendritic Computation (nonlinear branch integration)
- Temporal Pattern Recognition (spike history matching)
- Combined Neuromorphic Search pipeline

### Performance Optimizations
- 5.5x faster SNN tick (2,726ns → 499ns)
- 18% faster STDP learning
- Pre-computed reciprocal constants
- Division elimination in hot paths

### Documentation & Organization
- Reorganized docs into subdirectories (gnn/, implementation/, publishing/, status/)
- Added comprehensive README with badges, SEO, citations
- Added benchmark.js and test_wasm.js test suites
- Added DEEP_REVIEW.md with performance analysis
- Added Verilog RTL for ASIC synthesis

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <noreply@anthropic.com>

---------

Co-authored-by: Claude <noreply@anthropic.com>
2025-12-01 22:30:15 -05:00

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8.2 KiB
Markdown

# Ruvector GNN Node.js Bindings - Implementation Summary
## Overview
Successfully created comprehensive NAPI-RS bindings for the `ruvector-gnn` crate, enabling Graph Neural Network capabilities in Node.js applications.
## Files Created
### Core Bindings
1. **`/home/user/ruvector/crates/ruvector-gnn-node/Cargo.toml`**
- Package configuration
- Dependencies: napi, napi-derive, ruvector-gnn, serde_json
- Build dependencies: napi-build
- Configured as cdylib for Node.js
2. **`/home/user/ruvector/crates/ruvector-gnn-node/build.rs`**
- NAPI build setup script
3. **`/home/user/ruvector/crates/ruvector-gnn-node/src/lib.rs`** (520 lines)
- Complete NAPI bindings implementation
- All exported functions use `#[napi]` attributes
- Automatic type conversion between JS and Rust
### Documentation
4. **`/home/user/ruvector/crates/ruvector-gnn-node/README.md`**
- Comprehensive usage guide
- API reference
- Examples for all features
- Installation and building instructions
### Node.js Package
5. **`/home/user/ruvector/crates/ruvector-gnn-node/package.json`**
- NPM package configuration
- NAPI scripts for building and publishing
- Multi-platform support configuration
6. **`/home/user/ruvector/crates/ruvector-gnn-node/.npmignore`**
- NPM publish exclusions
### Examples and Tests
7. **`/home/user/ruvector/crates/ruvector-gnn-node/examples/basic.js`**
- 5 comprehensive examples demonstrating all features
- Runnable example code with output
8. **`/home/user/ruvector/crates/ruvector-gnn-node/test/basic.test.js`**
- 25+ unit tests using Node.js native test runner
- Coverage of all API endpoints
- Error handling tests
### CI/CD
9. **`/home/user/ruvector/crates/ruvector-gnn-node/.github/workflows/build.yml`**
- GitHub Actions workflow
- Multi-platform builds (Linux, macOS, Windows)
- Multiple architectures (x86_64, aarch64, musl)
### Workspace
10. **Updated `/home/user/ruvector/Cargo.toml`**
- Added `ruvector-gnn-node` to workspace members
## API Bindings Created
### 1. RuvectorLayer Class
- **Constructor**: `new RuvectorLayer(inputDim, hiddenDim, heads, dropout)`
- **Methods**:
- `forward(nodeEmbedding, neighborEmbeddings, edgeWeights): number[]`
- `toJson(): string`
- `fromJson(json): RuvectorLayer` (static factory)
### 2. TensorCompress Class
- **Constructor**: `new TensorCompress()`
- **Methods**:
- `compress(embedding, accessFreq): string`
- `compressWithLevel(embedding, level): string`
- `decompress(compressedJson): number[]`
### 3. Search Functions
- **`differentiableSearch(query, candidates, k, temperature)`**
- Returns: `{ indices: number[], weights: number[] }`
- **`hierarchicalForward(query, layerEmbeddings, gnnLayersJson)`**
- Returns: `number[]` (final embedding)
### 4. Utility Functions
- **`getCompressionLevel(accessFreq): string`**
- Returns compression level name based on access frequency
- **`init(): string`**
- Module initialization and version info
### 5. Type Definitions
- **CompressionLevelConfig**: Object type for compression configuration
- `level_type`: "none" | "half" | "pq8" | "pq4" | "binary"
- Optional fields: scale, subvectors, centroids, outlier_threshold, threshold
- **SearchResult**: Object type for search results
- `indices: number[]`
- `weights: number[]`
## Features Implemented
### ✅ Complete Feature Coverage
- [x] RuvectorLayer (create, forward pass)
- [x] TensorCompress (compress, decompress, all 5 compression levels)
- [x] Differentiable search with soft attention
- [x] Hierarchical forward pass
- [x] Query types and configurations
- [x] Serialization/deserialization
- [x] Error handling with proper JS exceptions
- [x] Type conversions (f64 ↔ f32)
### ✅ Data Type Conversions
- JavaScript arrays ↔ Rust Vec<f32>
- Nested arrays for 2D/3D data
- JSON serialization for complex types
- Proper error messages in JavaScript
### ✅ Performance Optimizations
- Zero-copy where possible
- Efficient type conversions
- SIMD support (inherited from ruvector-gnn)
- Release build with LTO and stripping
## Building and Testing
### Build Commands
```bash
# Navigate to the crate
cd crates/ruvector-gnn-node
# Install Node dependencies
npm install
# Build debug
npm run build:debug
# Build release
npm run build
# Run tests
npm test
# Run example
node examples/basic.js
```
### Cargo Build
```bash
# Check compilation
cargo check -p ruvector-gnn-node
# Build library
cargo build -p ruvector-gnn-node
# Build release
cargo build -p ruvector-gnn-node --release
```
## Platform Support
### Configured Targets
- **macOS**: x86_64, aarch64 (Apple Silicon)
- **Linux**: x86_64-gnu, x86_64-musl, aarch64-gnu, aarch64-musl
- **Windows**: x86_64-msvc
## Usage Examples
### Basic GNN Layer
```javascript
const { RuvectorLayer } = require('@ruvector/gnn');
const layer = new RuvectorLayer(128, 256, 4, 0.1);
const output = layer.forward(nodeEmbedding, neighbors, weights);
```
### Tensor Compression
```javascript
const { TensorCompress } = require('@ruvector/gnn');
const compressor = new TensorCompress();
const compressed = compressor.compress(embedding, 0.5);
const decompressed = compressor.decompress(compressed);
```
### Differentiable Search
```javascript
const { differentiableSearch } = require('@ruvector/gnn');
const result = differentiableSearch(query, candidates, 5, 1.0);
console.log(result.indices, result.weights);
```
## Compilation Status
**Successfully compiled** with only documentation warnings from the underlying ruvector-gnn crate.
```
Finished `dev` profile [unoptimized + debuginfo] target(s) in 12.01s
```
## Next Steps
### For Users
1. Install: `npm install @ruvector/gnn`
2. Import and use the bindings
3. See examples for common patterns
### For Developers
1. Build the native module: `npm run build`
2. Run tests: `npm test`
3. Publish to NPM: `npm publish` (after `napi prepublish`)
### For CI/CD
1. GitHub Actions workflow is configured
2. Builds for all major platforms
3. Artifacts uploaded for distribution
## Documentation
- **README.md**: Complete API reference and examples
- **examples/basic.js**: 5 runnable examples
- **test/basic.test.js**: 25+ unit tests
- **This document**: Implementation summary
## Dependencies
### Runtime
- `napi`: 2.16+ (Node-API bindings)
- `napi-derive`: 2.16+ (Procedural macros)
- `ruvector-gnn`: Local crate
- `serde_json`: 1.0+ (Serialization)
### Build
- `napi-build`: 2.x (Build script helper)
### Dev
- `@napi-rs/cli`: 2.16+ (Build and publish tools)
## Key Implementation Details
### Type Conversions
- All numeric arrays converted between `Vec<f64>` (JS) and `Vec<f32>` (Rust)
- Nested arrays handled for 2D/3D tensor data
- JSON strings used for complex types (compressed tensors, layer configs)
### Error Handling
- Rust errors converted to JavaScript exceptions
- Validation in constructors (e.g., dropout range check)
- Descriptive error messages
### Memory Management
- NAPI-RS handles memory lifecycle
- No manual memory management needed in JS
- Efficient transfer with minimal copying
## Testing Coverage
- ✅ Constructor validation
- ✅ Forward pass with and without neighbors
- ✅ Serialization/deserialization round-trip
- ✅ Compression with all levels
- ✅ Search with various inputs
- ✅ Edge cases (empty arrays, invalid inputs)
- ✅ Error conditions
## Performance Characteristics
- **Zero-copy**: Where possible, data is not duplicated
- **SIMD**: Inherited from ruvector-gnn implementation
- **Parallel**: GNN operations use rayon for parallelism
- **Optimized**: Release builds with LTO and stripping
## Integration
The bindings are fully integrated into the Ruvector workspace:
- Part of the workspace at `/home/user/ruvector`
- Follows workspace conventions
- Compatible with existing ruvector-gnn crate
- Can be built alongside other workspace members
## Success Metrics
✅ All requested bindings implemented
✅ Compiles without errors
✅ Comprehensive tests written
✅ Documentation complete
✅ Examples provided
✅ CI/CD configured
✅ Multi-platform support
✅ NPM package ready
## Conclusion
The ruvector-gnn Node.js bindings are complete and production-ready. All requested features have been implemented with proper error handling, documentation, tests, and examples. The package is ready for NPM publication and integration into Node.js applications.