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Addresses issue #362 - users were seeing hundreds of ERROR/WARNING logs when processing large documents due to SurrealDB v2 transaction conflicts during concurrent chunk embedding operations. Changes: - Upgraded to surreal-commands v1.3.0 which includes retry_log_level feature - Increased retry attempts from 5 to 15 with max wait time 120s (from 30s) to handle deep queues during concurrent processing - Set retry_log_level to "debug" in embed_chunk and process_source commands - Changed repository.py RuntimeError logging from ERROR to DEBUG level - Updated command exception handlers to log retries at DEBUG level - Updated documentation to reflect retry strategy This is a temporary workaround for SurrealDB v2.x transaction conflict issues with SEARCH indexes. Settings can be reduced after migrating to SurrealDB v3 which fixes the underlying concurrency issue. Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
6.7 KiB
6.7 KiB
Database Module
SurrealDB abstraction layer providing repository pattern for CRUD operations and async migration management.
Purpose
Encapsulates all database interactions: connection pooling, async CRUD operations, relationship management, and schema migrations. Provides clean interface for domain models and API endpoints to interact with SurrealDB without direct query knowledge.
Architecture Overview
Two-tier system:
- Repository Layer (repository.py): Raw async CRUD operations on SurrealDB via AsyncSurreal client
- Migration Layer (async_migrate.py): Schema versioning and migration execution
Both leverage connection context manager for lifecycle management and automatic cleanup.
Component Catalog
repository.py
Connection Management
get_database_url(): ResolvesSURREAL_URLor constructs fromSURREAL_ADDRESS/SURREAL_PORT(backward compatible)get_database_password(): Falls back fromSURREAL_PASSWORDto legacySURREAL_PASSenv vardb_connection(): Async context manager handling sign-in, namespace/database selection, and cleanup- Opens AsyncSurreal, authenticates, selects namespace/database, yields connection, closes on exit
Query Operations
repo_query(query_str, vars): Execute raw SurrealQL with parameter substitution; returns list of dictsrepo_create(table, data): Insert record; auto-addscreated/updatedtimestamps; removes any existingidfieldrepo_insert(table, data_list, ignore_duplicates): Bulk insert multiple records; optionally ignores "already contains" errorsrepo_upsert(table, id, data, add_timestamp): MERGE operation for create-or-update; optionally addsupdatedtimestamprepo_update(table, id, data): Update existing record by table+id or full record_id; auto-addsupdated, parses ISO datesrepo_delete(record_id): Delete record by RecordIDrepo_relate(source, relationship, target, data): Create graph relationship; optional relationship data
Utilities
parse_record_ids(obj): Recursively converts SurrealDB RecordID objects to strings (deep tree traversal)ensure_record_id(value): Coerces string or RecordID to RecordID type
async_migrate.py
Migration Classes
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AsyncMigration: Single migration wrapperfrom_file(path): Load .surrealql file; strips comments and whitespacerun(bump): Execute SQL; call bump_version() on success (bump=True) or lower_version() (bump=False)
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AsyncMigrationRunner: Sequences multiple migrationsrun_all(): Execute pending migrations from current_version to endrun_one_up(): Run next migrationrun_one_down(): Rollback latest migration
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AsyncMigrationManager: Main orchestrator- Loads 9 up migrations + 9 down migrations (hard-coded in init)
get_current_version(): Query max version from _sbl_migrations tableneeds_migration(): Boolean check (current < total migrations available)run_migration_up(): Run all pending migrations with logging
Version Tracking
get_latest_version(): Query max version; returns 0 if _sbl_migrations table missingget_all_versions(): Fetch all migration records; returns empty list on errorbump_version(): INSERT new entry into _sbl_migrations with version + applied_at timestamplower_version(): DELETE latest migration record (rollback)
migrate.py
Backward Compatibility
MigrationManager: Sync wrapper around AsyncMigrationManagerget_current_version(): Wraps async call with asyncio.run()needs_migrationproperty: Checks if migration pendingrun_migration_up(): Execute migrations synchronously
Common Patterns
- Async-first design: All operations async via AsyncSurreal; sync wrapper provided for legacy code
- Connection per operation: Each repo_* function opens/closes connection (no pooling); designed for serverless/stateless API
- Auto-timestamping: repo_create() and repo_update() auto-set
created/updatedfields - Error resilience: RuntimeError for transaction conflicts (retriable, logged at DEBUG level); catches and re-raises other exceptions
- RecordID polymorphism: Functions accept string or RecordID; coerced to consistent type
- Graceful degradation: Migration queries catch exceptions and treat table-not-found as version 0
Key Dependencies
surrealdb: AsyncSurreal client, RecordID typeloguru: Logging with context (debug/error/success levels)- Python stdlib:
os(env vars),datetime(timestamps),contextlib(async context manager)
Important Quirks & Gotchas
- No connection pooling: Each repo_* operation creates new connection; adequate for HTTP request-scoped operations but inefficient for bulk workloads
- Hard-coded migration files: AsyncMigrationManager lists migrations 1-9 explicitly; adding new migration requires code change (not auto-discovery)
- Record ID format inconsistency: repo_update() accepts both
table:idformat and full RecordID; path handling can be subtle - ISO date parsing: repo_update() parses
createdfield from string to datetime if present; assumes ISO format - Timestamp overwrite risk: repo_create() always sets new timestamps; can't preserve original created time on reimport
- Transaction conflict handling: RuntimeError from transaction conflicts logged at DEBUG level without stack trace (prevents log spam during concurrent operations)
- Graceful null returns: get_all_versions() returns [] on table missing; allows migration system to bootstrap cleanly
How to Extend
- Add new CRUD operation: Follow repo_* pattern (open connection, execute query, handle errors, close)
- Add migration: Create migration file in
/migrations/N.surrealqland/migrations/N_down.surrealql; update AsyncMigrationManager to load new files - Change timestamp behavior: Modify repo_create()/repo_update() to not auto-set
updatedfield if caller-provided - Implement connection pooling: Replace db_connection context manager with pool.acquire() pattern (for high-throughput scenarios)
Integration Points
- API startup (api/main.py): FastAPI lifespan handler calls AsyncMigrationManager.run_migration_up() on server start
- Domain models (domain/.py): All models call repo_ functions for persistence
- Commands (commands/.py): Background jobs use repo_ for state updates
- Streamlit UI (pages/*.py): Deprecated migration check; relies on API to run migrations
Usage Example
from open_notebook.database.repository import repo_create, repo_query, repo_update
# Create
record = await repo_create("notebooks", {"title": "Research"})
# Query
results = await repo_query("SELECT * FROM notebooks WHERE title = $title", {"title": "Research"})
# Update
await repo_update("notebooks", record["id"], {"title": "Updated Research"})