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Addresses issue #362 - users were seeing hundreds of ERROR/WARNING logs when processing large documents due to SurrealDB v2 transaction conflicts during concurrent chunk embedding operations. Changes: - Upgraded to surreal-commands v1.3.0 which includes retry_log_level feature - Increased retry attempts from 5 to 15 with max wait time 120s (from 30s) to handle deep queues during concurrent processing - Set retry_log_level to "debug" in embed_chunk and process_source commands - Changed repository.py RuntimeError logging from ERROR to DEBUG level - Updated command exception handlers to log retries at DEBUG level - Updated documentation to reflect retry strategy This is a temporary workaround for SurrealDB v2.x transaction conflict issues with SEARCH indexes. Settings can be reduced after migrating to SurrealDB v3 which fixes the underlying concurrency issue. Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>
124 lines
6.7 KiB
Markdown
124 lines
6.7 KiB
Markdown
# Database Module
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SurrealDB abstraction layer providing repository pattern for CRUD operations and async migration management.
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## Purpose
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Encapsulates all database interactions: connection pooling, async CRUD operations, relationship management, and schema migrations. Provides clean interface for domain models and API endpoints to interact with SurrealDB without direct query knowledge.
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## Architecture Overview
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Two-tier system:
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1. **Repository Layer** (repository.py): Raw async CRUD operations on SurrealDB via AsyncSurreal client
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2. **Migration Layer** (async_migrate.py): Schema versioning and migration execution
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Both leverage connection context manager for lifecycle management and automatic cleanup.
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## Component Catalog
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### repository.py
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**Connection Management**
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- `get_database_url()`: Resolves `SURREAL_URL` or constructs from `SURREAL_ADDRESS`/`SURREAL_PORT` (backward compatible)
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- `get_database_password()`: Falls back from `SURREAL_PASSWORD` to legacy `SURREAL_PASS` env var
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- `db_connection()`: Async context manager handling sign-in, namespace/database selection, and cleanup
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- Opens AsyncSurreal, authenticates, selects namespace/database, yields connection, closes on exit
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**Query Operations**
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- `repo_query(query_str, vars)`: Execute raw SurrealQL with parameter substitution; returns list of dicts
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- `repo_create(table, data)`: Insert record; auto-adds `created`/`updated` timestamps; removes any existing `id` field
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- `repo_insert(table, data_list, ignore_duplicates)`: Bulk insert multiple records; optionally ignores "already contains" errors
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- `repo_upsert(table, id, data, add_timestamp)`: MERGE operation for create-or-update; optionally adds `updated` timestamp
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- `repo_update(table, id, data)`: Update existing record by table+id or full record_id; auto-adds `updated`, parses ISO dates
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- `repo_delete(record_id)`: Delete record by RecordID
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- `repo_relate(source, relationship, target, data)`: Create graph relationship; optional relationship data
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**Utilities**
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- `parse_record_ids(obj)`: Recursively converts SurrealDB RecordID objects to strings (deep tree traversal)
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- `ensure_record_id(value)`: Coerces string or RecordID to RecordID type
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### async_migrate.py
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**Migration Classes**
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- `AsyncMigration`: Single migration wrapper
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- `from_file(path)`: Load .surrealql file; strips comments and whitespace
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- `run(bump)`: Execute SQL; call bump_version() on success (bump=True) or lower_version() (bump=False)
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- `AsyncMigrationRunner`: Sequences multiple migrations
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- `run_all()`: Execute pending migrations from current_version to end
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- `run_one_up()`: Run next migration
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- `run_one_down()`: Rollback latest migration
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- `AsyncMigrationManager`: Main orchestrator
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- Loads 9 up migrations + 9 down migrations (hard-coded in __init__)
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- `get_current_version()`: Query max version from _sbl_migrations table
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- `needs_migration()`: Boolean check (current < total migrations available)
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- `run_migration_up()`: Run all pending migrations with logging
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**Version Tracking**
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- `get_latest_version()`: Query max version; returns 0 if _sbl_migrations table missing
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- `get_all_versions()`: Fetch all migration records; returns empty list on error
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- `bump_version()`: INSERT new entry into _sbl_migrations with version + applied_at timestamp
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- `lower_version()`: DELETE latest migration record (rollback)
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### migrate.py
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**Backward Compatibility**
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- `MigrationManager`: Sync wrapper around AsyncMigrationManager
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- `get_current_version()`: Wraps async call with asyncio.run()
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- `needs_migration` property: Checks if migration pending
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- `run_migration_up()`: Execute migrations synchronously
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## Common Patterns
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- **Async-first design**: All operations async via AsyncSurreal; sync wrapper provided for legacy code
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- **Connection per operation**: Each repo_* function opens/closes connection (no pooling); designed for serverless/stateless API
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- **Auto-timestamping**: repo_create() and repo_update() auto-set `created`/`updated` fields
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- **Error resilience**: RuntimeError for transaction conflicts (retriable, logged at DEBUG level); catches and re-raises other exceptions
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- **RecordID polymorphism**: Functions accept string or RecordID; coerced to consistent type
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- **Graceful degradation**: Migration queries catch exceptions and treat table-not-found as version 0
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## Key Dependencies
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- `surrealdb`: AsyncSurreal client, RecordID type
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- `loguru`: Logging with context (debug/error/success levels)
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- Python stdlib: `os` (env vars), `datetime` (timestamps), `contextlib` (async context manager)
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## Important Quirks & Gotchas
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- **No connection pooling**: Each repo_* operation creates new connection; adequate for HTTP request-scoped operations but inefficient for bulk workloads
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- **Hard-coded migration files**: AsyncMigrationManager lists migrations 1-9 explicitly; adding new migration requires code change (not auto-discovery)
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- **Record ID format inconsistency**: repo_update() accepts both `table:id` format and full RecordID; path handling can be subtle
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- **ISO date parsing**: repo_update() parses `created` field from string to datetime if present; assumes ISO format
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- **Timestamp overwrite risk**: repo_create() always sets new timestamps; can't preserve original created time on reimport
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- **Transaction conflict handling**: RuntimeError from transaction conflicts logged at DEBUG level without stack trace (prevents log spam during concurrent operations)
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- **Graceful null returns**: get_all_versions() returns [] on table missing; allows migration system to bootstrap cleanly
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## How to Extend
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1. **Add new CRUD operation**: Follow repo_* pattern (open connection, execute query, handle errors, close)
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2. **Add migration**: Create migration file in `/migrations/N.surrealql` and `/migrations/N_down.surrealql`; update AsyncMigrationManager to load new files
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3. **Change timestamp behavior**: Modify repo_create()/repo_update() to not auto-set `updated` field if caller-provided
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4. **Implement connection pooling**: Replace db_connection context manager with pool.acquire() pattern (for high-throughput scenarios)
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## Integration Points
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- **API startup** (api/main.py): FastAPI lifespan handler calls AsyncMigrationManager.run_migration_up() on server start
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- **Domain models** (domain/*.py): All models call repo_* functions for persistence
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- **Commands** (commands/*.py): Background jobs use repo_* for state updates
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- **Streamlit UI** (pages/*.py): Deprecated migration check; relies on API to run migrations
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## Usage Example
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```python
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from open_notebook.database.repository import repo_create, repo_query, repo_update
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# Create
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record = await repo_create("notebooks", {"title": "Research"})
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# Query
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results = await repo_query("SELECT * FROM notebooks WHERE title = $title", {"title": "Research"})
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# Update
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await repo_update("notebooks", record["id"], {"title": "Updated Research"})
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```
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