diff --git a/.claude/rules/autonomous-loops.md b/.claude/rules/autonomous-loops.md
index 6f8048d4..ba9f249d 100644
--- a/.claude/rules/autonomous-loops.md
+++ b/.claude/rules/autonomous-loops.md
@@ -1,6 +1,6 @@
 # Autonomous Loops
 
-When running autonomous discovery/refactoring loops (`./discovery.sh --loop`):
+When running autonomous discovery/refactoring loops (`.claude/skills/setup-agent-team/discovery.sh --loop`):
 
 - **Run `bash -n` on every changed .sh file** before committing — syntax errors break everything
 - **NEVER revert a prior fix** — don't undo previously applied compatibility fixes
diff --git a/CLAUDE.md b/CLAUDE.md
index 9aaf77e7..5264810e 100644
--- a/CLAUDE.md
+++ b/CLAUDE.md
@@ -46,7 +46,6 @@ spawn/
     discovery.yml                # Scheduled + issue-triggered discovery workflow
     refactor.yml                 # Scheduled + issue-triggered refactor workflow
   manifest.json                  # The matrix (source of truth)
-  discovery.sh                   # Run this to trigger one discovery cycle
   fixtures/                      # API response fixtures for testing
   README.md                      # User-facing docs
   CLAUDE.md                      # This file — project overview