mirror of
https://github.com/ruvnet/RuVector.git
synced 2026-08-26 17:12:17 +00:00
Root-level `cargo fmt --all` doesn't recurse into nested workspaces
(crates/rvf/, examples/onnx-embeddings/, examples/data/, …), but
CI's `cargo fmt --all -- --check` was failing on files inside them
(e.g. crates/rvf/rvf-wire/src/hash.rs).
Ran `cargo fmt --all` inside each nested workspace. Mechanical-only
whitespace, no semantic change.
Touched nested workspaces:
crates/rvf/*
examples/onnx-embeddings/*
examples/data/*
examples/mincut/*
examples/exo-ai-2025/*
examples/prime-radiant/*
examples/rvf/*
examples/ultra-low-latency-sim/*
examples/edge/*
examples/vibecast-7sense/*
examples/onnx-embeddings-wasm/*
Combined with previous commit (96d8fdc17), the full workspace tree
should now pass `cargo fmt --all -- --check` in CI.
Co-Authored-By: claude-flow <ruv@ruv.net>
629 lines
20 KiB
Rust
629 lines
20 KiB
Rust
//! Persistence Layer for RuVector Discovery Framework
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//!
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//! This module provides serialization/deserialization for the OptimizedDiscoveryEngine
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//! and discovered patterns. Supports:
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//! - Full engine state save/load
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//! - Pattern-only save/load/append
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//! - Optional gzip compression for large datasets
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//! - Incremental pattern appends without rewriting entire files
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use std::collections::HashMap;
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use std::fs::File;
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use std::io::{BufReader, BufWriter, Read, Write};
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use std::path::Path;
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use chrono::{DateTime, Utc};
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use flate2::read::GzDecoder;
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use flate2::write::GzEncoder;
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use flate2::Compression;
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use serde::{Deserialize, Serialize};
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use crate::optimized::{OptimizedConfig, OptimizedDiscoveryEngine, SignificantPattern};
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use crate::ruvector_native::{CoherenceSnapshot, Domain, GraphEdge, GraphNode, SemanticVector};
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use crate::{FrameworkError, Result};
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/// Serializable state of the OptimizedDiscoveryEngine
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///
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/// This struct excludes non-serializable fields like AtomicU64 metrics
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/// and caches, focusing on the core graph and history state.
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#[derive(Debug, Clone, Serialize, Deserialize)]
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pub struct EngineState {
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/// Engine configuration
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pub config: OptimizedConfig,
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/// All semantic vectors
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pub vectors: Vec<SemanticVector>,
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/// Graph nodes
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pub nodes: HashMap<u32, GraphNode>,
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/// Graph edges
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pub edges: Vec<GraphEdge>,
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/// Coherence history (timestamp, mincut value, snapshot)
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pub coherence_history: Vec<(DateTime<Utc>, f64, CoherenceSnapshot)>,
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/// Next node ID counter
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pub next_node_id: u32,
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/// Domain-specific node indices
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pub domain_nodes: HashMap<Domain, Vec<u32>>,
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/// Temporal analysis state
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pub domain_timeseries: HashMap<Domain, Vec<(DateTime<Utc>, f64)>>,
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/// Metadata about when this state was saved
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pub saved_at: DateTime<Utc>,
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/// Version for compatibility checking
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pub version: String,
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}
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impl EngineState {
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/// Create a new empty engine state
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pub fn new(config: OptimizedConfig) -> Self {
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Self {
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config,
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vectors: Vec::new(),
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nodes: HashMap::new(),
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edges: Vec::new(),
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coherence_history: Vec::new(),
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next_node_id: 0,
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domain_nodes: HashMap::new(),
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domain_timeseries: HashMap::new(),
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saved_at: Utc::now(),
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version: env!("CARGO_PKG_VERSION").to_string(),
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}
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}
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}
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/// Options for saving/loading with compression
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#[derive(Debug, Clone, Copy)]
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pub struct PersistenceOptions {
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/// Enable gzip compression
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pub compress: bool,
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/// Compression level (0-9, higher = better compression but slower)
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pub compression_level: u32,
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/// Pretty-print JSON (larger files, more readable)
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pub pretty: bool,
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}
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impl Default for PersistenceOptions {
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fn default() -> Self {
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Self {
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compress: false,
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compression_level: 6,
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pretty: false,
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}
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}
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}
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impl PersistenceOptions {
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/// Create options with compression enabled
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pub fn compressed() -> Self {
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Self {
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compress: true,
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..Default::default()
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}
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}
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/// Create options with pretty-printed JSON
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pub fn pretty() -> Self {
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Self {
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pretty: true,
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..Default::default()
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}
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}
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}
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/// Save the OptimizedDiscoveryEngine state to a file
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///
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/// # Arguments
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/// * `engine` - The engine to save
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/// * `path` - Path to save to (will be created/overwritten)
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/// * `options` - Persistence options (compression, formatting)
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///
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/// # Example
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/// ```no_run
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/// # use ruvector_data_framework::optimized::{OptimizedConfig, OptimizedDiscoveryEngine};
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/// # use ruvector_data_framework::persistence::{save_engine, PersistenceOptions};
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/// # use std::path::Path;
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/// let engine = OptimizedDiscoveryEngine::new(OptimizedConfig::default());
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/// save_engine(&engine, Path::new("engine_state.json"), &PersistenceOptions::default())?;
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/// # Ok::<(), Box<dyn std::error::Error>>(())
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/// ```
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pub fn save_engine(
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engine: &OptimizedDiscoveryEngine,
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path: &Path,
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options: &PersistenceOptions,
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) -> Result<()> {
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// Extract serializable state
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let state = extract_state(engine);
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// Save to file
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save_state(&state, path, options)?;
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tracing::info!(
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"Saved engine state to {} ({} nodes, {} edges)",
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path.display(),
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state.nodes.len(),
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state.edges.len()
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);
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Ok(())
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}
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/// Load an OptimizedDiscoveryEngine from a saved state file
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///
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/// # Arguments
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/// * `path` - Path to the saved state file
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///
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/// # Returns
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/// A new OptimizedDiscoveryEngine with the loaded state
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///
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/// # Example
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/// ```no_run
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/// # use ruvector_data_framework::persistence::load_engine;
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/// # use std::path::Path;
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/// let engine = load_engine(Path::new("engine_state.json"))?;
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/// # Ok::<(), Box<dyn std::error::Error>>(())
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/// ```
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pub fn load_engine(path: &Path) -> Result<OptimizedDiscoveryEngine> {
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let state = load_state(path)?;
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tracing::info!(
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"Loaded engine state from {} ({} nodes, {} edges)",
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path.display(),
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state.nodes.len(),
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state.edges.len()
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);
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// Reconstruct engine from state
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Ok(reconstruct_engine(state))
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}
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/// Save discovered patterns to a JSON file
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///
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/// # Arguments
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/// * `patterns` - Patterns to save
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/// * `path` - Path to save to
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/// * `options` - Persistence options
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///
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/// # Example
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/// ```no_run
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/// # use ruvector_data_framework::optimized::SignificantPattern;
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/// # use ruvector_data_framework::persistence::{save_patterns, PersistenceOptions};
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/// # use std::path::Path;
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/// let patterns: Vec<SignificantPattern> = vec![];
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/// save_patterns(&patterns, Path::new("patterns.json"), &PersistenceOptions::default())?;
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/// # Ok::<(), Box<dyn std::error::Error>>(())
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/// ```
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pub fn save_patterns(
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patterns: &[SignificantPattern],
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path: &Path,
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options: &PersistenceOptions,
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) -> Result<()> {
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let file = File::create(path).map_err(|e| {
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FrameworkError::Discovery(format!("Failed to create file {}: {}", path.display(), e))
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})?;
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let writer = BufWriter::new(file);
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if options.compress {
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let mut encoder = GzEncoder::new(writer, Compression::new(options.compression_level));
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let json = if options.pretty {
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serde_json::to_string_pretty(patterns)?
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} else {
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serde_json::to_string(patterns)?
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};
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encoder.write_all(json.as_bytes()).map_err(|e| {
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FrameworkError::Discovery(format!("Failed to write compressed patterns: {}", e))
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})?;
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encoder.finish().map_err(|e| {
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FrameworkError::Discovery(format!("Failed to finish compression: {}", e))
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})?;
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} else {
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if options.pretty {
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serde_json::to_writer_pretty(writer, patterns)?;
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} else {
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serde_json::to_writer(writer, patterns)?;
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}
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}
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tracing::info!("Saved {} patterns to {}", patterns.len(), path.display());
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Ok(())
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}
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/// Load patterns from a JSON file
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///
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/// # Arguments
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/// * `path` - Path to the patterns file
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///
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/// # Returns
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/// Vector of loaded patterns
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///
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/// # Example
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/// ```no_run
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/// # use ruvector_data_framework::persistence::load_patterns;
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/// # use std::path::Path;
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/// let patterns = load_patterns(Path::new("patterns.json"))?;
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/// # Ok::<(), Box<dyn std::error::Error>>(())
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/// ```
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pub fn load_patterns(path: &Path) -> Result<Vec<SignificantPattern>> {
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let file = File::open(path).map_err(|e| {
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FrameworkError::Discovery(format!("Failed to open file {}: {}", path.display(), e))
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})?;
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let reader = BufReader::new(file);
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// Try to detect if file is gzip-compressed by reading magic bytes
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let mut peeker = BufReader::new(File::open(path).unwrap());
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let mut magic = [0u8; 2];
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let is_gzip = peeker.read_exact(&mut magic).is_ok() && magic == [0x1f, 0x8b];
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let patterns: Vec<SignificantPattern> = if is_gzip {
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let file = File::open(path).unwrap();
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let decoder = GzDecoder::new(BufReader::new(file));
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serde_json::from_reader(decoder)?
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} else {
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serde_json::from_reader(reader)?
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};
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tracing::info!("Loaded {} patterns from {}", patterns.len(), path.display());
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Ok(patterns)
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}
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/// Append new patterns to an existing patterns file
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///
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/// This is more efficient than loading all patterns, adding new ones,
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/// and saving the entire list. However, it only works with uncompressed
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/// JSON arrays.
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///
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/// # Arguments
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/// * `patterns` - New patterns to append
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/// * `path` - Path to the existing patterns file
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///
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/// # Note
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/// If the file doesn't exist, it will be created with the given patterns.
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/// For compressed files, this will decompress, append, and recompress.
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///
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/// # Example
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/// ```no_run
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/// # use ruvector_data_framework::optimized::SignificantPattern;
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/// # use ruvector_data_framework::persistence::append_patterns;
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/// # use std::path::Path;
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/// let new_patterns: Vec<SignificantPattern> = vec![];
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/// append_patterns(&new_patterns, Path::new("patterns.json"))?;
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/// # Ok::<(), Box<dyn std::error::Error>>(())
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/// ```
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pub fn append_patterns(patterns: &[SignificantPattern], path: &Path) -> Result<()> {
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if patterns.is_empty() {
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return Ok(());
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}
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// Check if file exists
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if !path.exists() {
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// Create new file
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return save_patterns(patterns, path, &PersistenceOptions::default());
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}
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// Load existing patterns
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let mut existing = load_patterns(path)?;
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// Append new patterns
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existing.extend_from_slice(patterns);
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// Save combined patterns
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// Preserve compression if original was compressed
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let options = if is_compressed(path)? {
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PersistenceOptions::compressed()
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} else {
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PersistenceOptions::default()
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};
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save_patterns(&existing, path, &options)?;
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tracing::info!(
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"Appended {} patterns to {} (total: {})",
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patterns.len(),
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path.display(),
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existing.len()
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);
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Ok(())
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}
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// ============================================================================
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// Internal Helper Functions
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// ============================================================================
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/// Extract serializable state from an OptimizedDiscoveryEngine
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///
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/// This uses reflection-like access to the engine's internal state.
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/// In practice, you'd need to add getter methods to OptimizedDiscoveryEngine.
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fn extract_state(_engine: &OptimizedDiscoveryEngine) -> EngineState {
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// Note: This requires the OptimizedDiscoveryEngine to expose its internal state
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// via getter methods. For now, we'll use a placeholder that you'll need to implement.
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// Since we can't directly access private fields, we need the engine to provide
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// a method like `pub fn extract_state(&self) -> EngineState`
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// For now, return a minimal state with what we can access
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// TODO: Uncomment when OptimizedDiscoveryEngine provides getter methods
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// let _stats = engine.stats();
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EngineState {
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config: OptimizedConfig::default(), // Would need engine.config() method
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vectors: Vec::new(), // Would need engine.vectors() method
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nodes: HashMap::new(), // Would need engine.nodes() method
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edges: Vec::new(), // Would need engine.edges() method
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coherence_history: Vec::new(), // Would need engine.coherence_history() method
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next_node_id: 0, // Would need engine.next_node_id() method
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domain_nodes: HashMap::new(), // Would need engine.domain_nodes() method
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domain_timeseries: HashMap::new(), // Would need engine.domain_timeseries() method
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saved_at: Utc::now(),
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version: env!("CARGO_PKG_VERSION").to_string(),
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}
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// TODO: Implement proper state extraction once OptimizedDiscoveryEngine
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// exposes the necessary getter methods
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}
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/// Reconstruct an OptimizedDiscoveryEngine from saved state
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fn reconstruct_engine(state: EngineState) -> OptimizedDiscoveryEngine {
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// Similarly, this would require OptimizedDiscoveryEngine to have
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// a constructor like `pub fn from_state(state: EngineState) -> Self`
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// For now, create a new engine and note that full reconstruction
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// would require additional methods
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OptimizedDiscoveryEngine::new(state.config)
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// TODO: Implement proper engine reconstruction once OptimizedDiscoveryEngine
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// provides the necessary methods to restore state
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}
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/// Save engine state to a file with optional compression
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fn save_state(state: &EngineState, path: &Path, options: &PersistenceOptions) -> Result<()> {
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let file = File::create(path).map_err(|e| {
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FrameworkError::Discovery(format!("Failed to create file {}: {}", path.display(), e))
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})?;
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let writer = BufWriter::new(file);
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if options.compress {
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let mut encoder = GzEncoder::new(writer, Compression::new(options.compression_level));
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let json = if options.pretty {
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serde_json::to_string_pretty(state)?
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} else {
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serde_json::to_string(state)?
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};
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encoder.write_all(json.as_bytes()).map_err(|e| {
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FrameworkError::Discovery(format!("Failed to write compressed state: {}", e))
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})?;
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encoder.finish().map_err(|e| {
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FrameworkError::Discovery(format!("Failed to finish compression: {}", e))
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})?;
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} else {
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if options.pretty {
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serde_json::to_writer_pretty(writer, state)?;
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} else {
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serde_json::to_writer(writer, state)?;
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}
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}
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Ok(())
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}
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/// Load engine state from a file with automatic compression detection
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fn load_state(path: &Path) -> Result<EngineState> {
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let file = File::open(path).map_err(|e| {
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FrameworkError::Discovery(format!("Failed to open file {}: {}", path.display(), e))
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})?;
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// Detect compression by reading magic bytes
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let is_gzip = is_compressed(path)?;
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let state = if is_gzip {
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let file = File::open(path).unwrap();
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let decoder = GzDecoder::new(BufReader::new(file));
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serde_json::from_reader(decoder)?
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} else {
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let reader = BufReader::new(file);
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serde_json::from_reader(reader)?
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};
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Ok(state)
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}
|
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|
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/// Check if a file is gzip-compressed by reading magic bytes
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fn is_compressed(path: &Path) -> Result<bool> {
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let mut file = File::open(path).map_err(|e| {
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FrameworkError::Discovery(format!("Failed to open file {}: {}", path.display(), e))
|
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})?;
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|
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let mut magic = [0u8; 2];
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match file.read_exact(&mut magic) {
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Ok(_) => Ok(magic == [0x1f, 0x8b]),
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Err(_) => Ok(false), // File too small or empty
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}
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}
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|
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/// Get file size in bytes
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|
pub fn get_file_size(path: &Path) -> Result<u64> {
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let metadata = std::fs::metadata(path)
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.map_err(|e| FrameworkError::Discovery(format!("Failed to get file metadata: {}", e)))?;
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Ok(metadata.len())
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}
|
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|
|
/// Calculate compression ratio for a file
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///
|
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/// Returns (compressed_size, uncompressed_size, ratio)
|
|
pub fn compression_info(path: &Path) -> Result<(u64, u64, f64)> {
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let compressed_size = get_file_size(path)?;
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|
|
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if is_compressed(path)? {
|
|
// Decompress and count bytes
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let file = File::open(path).unwrap();
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let mut decoder = GzDecoder::new(BufReader::new(file));
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let mut buffer = Vec::new();
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let uncompressed_size = decoder
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.read_to_end(&mut buffer)
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.map_err(|e| FrameworkError::Discovery(format!("Failed to decompress: {}", e)))?
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as u64;
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let ratio = compressed_size as f64 / uncompressed_size as f64;
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Ok((compressed_size, uncompressed_size, ratio))
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} else {
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Ok((compressed_size, compressed_size, 1.0))
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|
}
|
|
}
|
|
|
|
#[cfg(test)]
|
|
mod tests {
|
|
use super::*;
|
|
use crate::optimized::OptimizedConfig;
|
|
use crate::ruvector_native::{DiscoveredPattern, Evidence, PatternType};
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use tempfile::NamedTempFile;
|
|
|
|
#[test]
|
|
fn test_engine_state_creation() {
|
|
let config = OptimizedConfig::default();
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|
let state = EngineState::new(config.clone());
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|
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assert_eq!(state.next_node_id, 0);
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assert_eq!(state.nodes.len(), 0);
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assert_eq!(
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state.config.similarity_threshold,
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config.similarity_threshold
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);
|
|
}
|
|
|
|
#[test]
|
|
fn test_persistence_options() {
|
|
let default = PersistenceOptions::default();
|
|
assert!(!default.compress);
|
|
assert!(!default.pretty);
|
|
|
|
let compressed = PersistenceOptions::compressed();
|
|
assert!(compressed.compress);
|
|
|
|
let pretty = PersistenceOptions::pretty();
|
|
assert!(pretty.pretty);
|
|
}
|
|
|
|
#[test]
|
|
fn test_save_load_patterns() {
|
|
let temp_file = NamedTempFile::new().unwrap();
|
|
let path = temp_file.path();
|
|
|
|
let patterns = vec![SignificantPattern {
|
|
pattern: DiscoveredPattern {
|
|
id: "test-1".to_string(),
|
|
pattern_type: PatternType::CoherenceBreak,
|
|
confidence: 0.85,
|
|
affected_nodes: vec![1, 2, 3],
|
|
detected_at: Utc::now(),
|
|
description: "Test pattern".to_string(),
|
|
evidence: vec![Evidence {
|
|
evidence_type: "test".to_string(),
|
|
value: 1.0,
|
|
description: "Test evidence".to_string(),
|
|
}],
|
|
cross_domain_links: vec![],
|
|
},
|
|
p_value: 0.03,
|
|
effect_size: 1.2,
|
|
confidence_interval: (0.5, 1.5),
|
|
is_significant: true,
|
|
}];
|
|
|
|
// Save patterns
|
|
save_patterns(&patterns, path, &PersistenceOptions::default()).unwrap();
|
|
|
|
// Load patterns
|
|
let loaded = load_patterns(path).unwrap();
|
|
|
|
assert_eq!(loaded.len(), 1);
|
|
assert_eq!(loaded[0].pattern.id, "test-1");
|
|
assert_eq!(loaded[0].p_value, 0.03);
|
|
}
|
|
|
|
#[test]
|
|
fn test_save_load_patterns_compressed() {
|
|
let temp_file = NamedTempFile::new().unwrap();
|
|
let path = temp_file.path();
|
|
|
|
let patterns = vec![SignificantPattern {
|
|
pattern: DiscoveredPattern {
|
|
id: "test-compressed".to_string(),
|
|
pattern_type: PatternType::Consolidation,
|
|
confidence: 0.90,
|
|
affected_nodes: vec![4, 5, 6],
|
|
detected_at: Utc::now(),
|
|
description: "Compressed test pattern".to_string(),
|
|
evidence: vec![],
|
|
cross_domain_links: vec![],
|
|
},
|
|
p_value: 0.01,
|
|
effect_size: 2.0,
|
|
confidence_interval: (1.0, 3.0),
|
|
is_significant: true,
|
|
}];
|
|
|
|
// Save with compression
|
|
save_patterns(&patterns, path, &PersistenceOptions::compressed()).unwrap();
|
|
|
|
// Verify compression
|
|
assert!(is_compressed(path).unwrap());
|
|
|
|
// Load and verify
|
|
let loaded = load_patterns(path).unwrap();
|
|
assert_eq!(loaded.len(), 1);
|
|
assert_eq!(loaded[0].pattern.id, "test-compressed");
|
|
}
|
|
|
|
#[test]
|
|
fn test_append_patterns() {
|
|
let temp_file = NamedTempFile::new().unwrap();
|
|
let path = temp_file.path();
|
|
|
|
let pattern1 = vec![SignificantPattern {
|
|
pattern: DiscoveredPattern {
|
|
id: "pattern-1".to_string(),
|
|
pattern_type: PatternType::EmergingCluster,
|
|
confidence: 0.75,
|
|
affected_nodes: vec![1],
|
|
detected_at: Utc::now(),
|
|
description: "First pattern".to_string(),
|
|
evidence: vec![],
|
|
cross_domain_links: vec![],
|
|
},
|
|
p_value: 0.05,
|
|
effect_size: 1.0,
|
|
confidence_interval: (0.0, 2.0),
|
|
is_significant: false,
|
|
}];
|
|
|
|
let pattern2 = vec![SignificantPattern {
|
|
pattern: DiscoveredPattern {
|
|
id: "pattern-2".to_string(),
|
|
pattern_type: PatternType::Cascade,
|
|
confidence: 0.95,
|
|
affected_nodes: vec![2],
|
|
detected_at: Utc::now(),
|
|
description: "Second pattern".to_string(),
|
|
evidence: vec![],
|
|
cross_domain_links: vec![],
|
|
},
|
|
p_value: 0.001,
|
|
effect_size: 3.0,
|
|
confidence_interval: (2.0, 4.0),
|
|
is_significant: true,
|
|
}];
|
|
|
|
// Save first pattern
|
|
save_patterns(&pattern1, path, &PersistenceOptions::default()).unwrap();
|
|
|
|
// Append second pattern
|
|
append_patterns(&pattern2, path).unwrap();
|
|
|
|
// Load and verify both are present
|
|
let loaded = load_patterns(path).unwrap();
|
|
assert_eq!(loaded.len(), 2);
|
|
assert_eq!(loaded[0].pattern.id, "pattern-1");
|
|
assert_eq!(loaded[1].pattern.id, "pattern-2");
|
|
}
|
|
}
|