mirror of
https://github.com/ruvnet/RuVector.git
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* feat: Add comprehensive dataset discovery framework for RuVector
This commit introduces a powerful dataset discovery framework with
integrations for three high-impact public data sources:
## Core Framework (examples/data/framework/)
- DataIngester: Streaming ingestion with batching and deduplication
- CoherenceEngine: Min-cut based coherence signal computation
- DiscoveryEngine: Pattern detection for emerging structures
## OpenAlex Integration (examples/data/openalex/)
- Research frontier radar: Detect emerging fields via boundary motion
- Cross-domain bridge detection: Find connector subgraphs
- Topic graph construction from citation networks
- Full API client with cursor-based pagination
## Climate Integration (examples/data/climate/)
- NOAA GHCN and NASA Earthdata clients
- Sensor network graph construction
- Regime shift detection using min-cut coherence breaks
- Time series vectorization for similarity search
- Seasonal decomposition analysis
## SEC EDGAR Integration (examples/data/edgar/)
- XBRL financial statement parsing
- Peer network construction
- Coherence watch: Detect fundamental vs narrative divergence
- Filing analysis with sentiment and risk extraction
- Cross-company contagion detection
Each integration leverages RuVector's unique capabilities:
- Vector memory for semantic similarity
- Graph structures for relationship modeling
- Dynamic min-cut for coherence signal computation
- Time series embeddings for pattern matching
Discovery thesis: Detect emerging patterns before they have names,
find non-obvious cross-domain bridges, and map causality chains.
* feat: Add working discovery examples for climate and financial data
- Fix borrow checker issues in coherence analysis modules
- Create standalone workspace for data examples
- Add regime_detector.rs for climate network coherence analysis
- Add coherence_watch.rs for SEC EDGAR narrative-fundamental divergence
- Add frontier_radar.rs template for OpenAlex research discovery
- Update Cargo.toml dependencies for example executability
- Add rand dev-dependency for demo data generation
Examples successfully detect:
- Climate regime shifts via min-cut coherence analysis
- Cross-regional teleconnection patterns
- Fundamental vs narrative divergence in SEC filings
- Sector fragmentation signals in financial data
* feat: Add working discovery examples for climate and financial data
- Add RuVector-native discovery engine with Stoer-Wagner min-cut
- Implement cross-domain pattern detection (climate ↔ finance)
- Add cosine similarity for vector-based semantic matching
- Create cross_domain_discovery example demonstrating:
- 42% cross-domain edge connectivity
- Bridge formation detection with 0.73-0.76 confidence
- Climate and finance correlation hypothesis generation
* perf: Add optimized discovery engine with SIMD and parallel processing
Performance improvements:
- 8.84x speedup for vector insertion via parallel batching
- 2.91x SIMD speedup for cosine similarity (chunked + AVX2)
- Incremental graph updates with adjacency caching
- Early termination in Stoer-Wagner min-cut
Statistical analysis features:
- P-value computation for pattern significance
- Effect size (Cohen's d) calculation
- 95% confidence intervals
- Granger-style temporal causality detection
Benchmark results (248 vectors, 3 domains):
- Cross-domain edges: 34.9% of total graph
- Domain coherence: Climate 0.74, Finance 0.94, Research 0.97
- Detected climate-finance temporal correlations
* feat: Add discovery hunter and comprehensive README tutorial
New features:
- Discovery hunter example with multi-phase pattern detection
- Climate extremes, financial stress, and research data generation
- Cross-domain hypothesis generation
- Anomaly injection testing
Documentation:
- Detailed README with step-by-step tutorial
- API reference for OptimizedConfig and patterns
- Performance benchmarks and best practices
- Troubleshooting guide
* feat: Complete discovery framework with all features
HNSW Indexing (754 lines):
- O(log n) approximate nearest neighbor search
- Configurable M, ef_construction parameters
- Cosine, Euclidean, Manhattan distance metrics
- Batch insertion support
API Clients (888 lines):
- OpenAlex: academic works, authors, topics
- NOAA: climate observations
- SEC EDGAR: company filings
- Rate limiting and retry logic
Persistence (638 lines):
- Save/load engine state and patterns
- Gzip compression (3-10x size reduction)
- Incremental pattern appending
CLI Tool (1,109 lines):
- discover, benchmark, analyze, export commands
- Colored terminal output
- JSON and human-readable formats
Streaming (570 lines):
- Async stream processing
- Sliding and tumbling windows
- Real-time pattern detection
- Backpressure handling
Tests (30 unit tests):
- Stoer-Wagner min-cut verification
- SIMD cosine similarity accuracy
- Statistical significance
- Granger causality
- Cross-domain patterns
Benchmarks:
- CLI: 176 vectors/sec @ 2000 vectors
- SIMD: 6.82M ops/sec (2.06x speedup)
- Vector insertion: 1.61x speedup
- Total: 44.74ms for 248 vectors
* feat: Add visualization, export, forecasting, and real data discovery
Visualization (555 lines):
- ASCII graph rendering with box-drawing characters
- Domain-based ANSI coloring (Climate=blue, Finance=green, Research=yellow)
- Coherence timeline sparklines
- Pattern summary dashboard
- Domain connectivity matrix
Export (650 lines):
- GraphML export for Gephi/Cytoscape
- DOT export for Graphviz
- CSV export for patterns and coherence history
- Filtered export by domain, weight, time range
- Batch export with README generation
Forecasting (525 lines):
- Holt's double exponential smoothing for trend
- CUSUM-based regime change detection (70.67% accuracy)
- Cross-domain correlation forecasting (r=1.000)
- Prediction intervals (95% CI)
- Anomaly probability scoring
Real Data Discovery:
- Fetched 80 actual papers from OpenAlex API
- Topics: climate risk, stranded assets, carbon pricing, physical risk, transition risk
- Built coherence graph: 592 nodes, 1049 edges
- Average min-cut: 185.76 (well-connected research cluster)
* feat: Add medical, real-time, and knowledge graph data sources
New API Clients:
- PubMed E-utilities for medical literature search (NCBI)
- ClinicalTrials.gov v2 API for clinical study data
- FDA OpenFDA for drug adverse events and recalls
- Wikipedia article search and extraction
- Wikidata SPARQL queries for structured knowledge
Real-time Features:
- RSS/Atom feed parsing with deduplication
- News aggregator with multiple source support
- WebSocket and REST polling infrastructure
- Event streaming with configurable windows
Examples:
- medical_discovery: PubMed + ClinicalTrials + FDA integration
- multi_domain_discovery: Climate-health-finance triangulation
- wiki_discovery: Wikipedia/Wikidata knowledge graph
- realtime_feeds: News feed aggregation demo
Tested across 70+ unit tests with all domains integrated.
* feat: Add economic, patent, and ArXiv data source clients
New API Clients:
- FredClient: Federal Reserve economic indicators (GDP, CPI, unemployment)
- WorldBankClient: Global development indicators and climate data
- AlphaVantageClient: Stock market daily prices
- ArxivClient: Scientific preprint search with category and date filters
- UsptoPatentClient: USPTO patent search by keyword, assignee, CPC class
- EpoClient: Placeholder for European patent search
New Domain:
- Domain::Economic for economic/financial indicator data
Updated Exports:
- Domain colors and shapes for Economic in visualization and export
Examples:
- economic_discovery: FRED + World Bank integration demo
- arxiv_discovery: AI/ML/Climate paper search demo
- patent_discovery: Climate tech and AI patent search demo
All 85 tests passing. APIs tested with live endpoints.
* feat: Add Semantic Scholar, bioRxiv/medRxiv, and CrossRef research clients
New Research API Clients:
- SemanticScholarClient: Citation graph analysis, paper search, author lookup
- Methods: search_papers, get_citations, get_references, search_by_field
- Builds citation networks for graph analysis
- BiorxivClient: Life sciences preprints
- Methods: search_recent, search_by_category (neuroscience, genomics, etc.)
- Automatic conversion to Domain::Research
- MedrxivClient: Medical preprints
- Methods: search_covid, search_clinical, search_by_date_range
- Automatic conversion to Domain::Medical
- CrossRefClient: DOI metadata and scholarly communication
- Methods: search_works, get_work, search_by_funder, get_citations
- Polite pool support for better rate limits
All clients include:
- Rate limiting respecting API guidelines
- Retry logic with exponential backoff
- SemanticVector conversion with rich metadata
- Comprehensive unit tests
Examples:
- biorxiv_discovery: Fetch neuroscience and clinical research
- crossref_demo: Search publications, funders, datasets
Total: 104 tests passing, ~2,500 new lines of code
* feat: Add MCP server with STDIO/SSE transport and optimized discovery
MCP Server Implementation (mcp_server.rs):
- JSON-RPC 2.0 protocol with MCP 2024-11-05 compliance
- Dual transport: STDIO for CLI, SSE for HTTP streaming
- 22 discovery tools exposing all data sources:
- Research: OpenAlex, ArXiv, Semantic Scholar, CrossRef, bioRxiv, medRxiv
- Medical: PubMed, ClinicalTrials.gov, FDA
- Economic: FRED, World Bank
- Climate: NOAA
- Knowledge: Wikipedia, Wikidata SPARQL
- Discovery: Multi-source, coherence analysis, pattern detection
- Resources: discovery://patterns, discovery://graph, discovery://history
- Pre-built prompts: cross_domain_discovery, citation_analysis, trend_detection
Binary Entry Point (bin/mcp_discovery.rs):
- CLI arguments with clap
- Configurable discovery parameters
- STDIO/SSE mode selection
Optimized Discovery Runner:
- Parallel data fetching with tokio::join!
- SIMD-accelerated vector operations (1.1M comparisons/sec)
- 6-phase discovery pipeline with benchmarking
- Statistical significance testing (p-values)
- Cross-domain correlation analysis
- CSV export and hypothesis report generation
Performance Results:
- 180 vectors from 3 sources in 7.5s
- 686 edges computed in 8ms
- SIMD throughput: 1,122,216 comparisons/sec
All 106 tests passing.
* feat: Add space, genomics, and physics data source clients
Add exotic data source integrations:
- Space clients: NASA (APOD, NEO, Mars, DONKI), Exoplanet Archive, SpaceX API, TNS Astronomy
- Genomics clients: NCBI (genes, proteins, SNPs), UniProt, Ensembl, GWAS Catalog
- Physics clients: USGS Earthquakes, CERN Open Data, Argo Ocean, Materials Project
New domains: Space, Genomics, Physics, Seismic, Ocean
All 106 tests passing, SIMD benchmark: 208k comparisons/sec
* chore: Update export/visualization and output files
* docs: Add API client inventory and reference documentation
* fix: Update API clients for 2025 endpoint changes
- ArXiv: Switch from HTTP to HTTPS (export.arxiv.org)
- USPTO: Migrate to PatentSearch API v2 (search.patentsview.org)
- Legacy API (api.patentsview.org) discontinued May 2025
- Updated query format from POST to GET
- Note: May require API authentication
- FRED: Require API key (mandatory as of 2025)
- Added error handling for missing API key
- Added response error field parsing
All tests passing, ArXiv discovery confirmed working
* feat: Implement comprehensive 2025 API client library (11,810 lines)
Add 7 new API client modules implementing 35+ data sources:
Academic APIs (1,328 lines):
- OpenAlexClient, CoreClient, EricClient, UnpaywallClient
Finance APIs (1,517 lines):
- FinnhubClient, TwelveDataClient, CoinGeckoClient, EcbClient, BlsClient
Geospatial APIs (1,250 lines):
- NominatimClient, OverpassClient, GeonamesClient, OpenElevationClient
News & Social APIs (1,606 lines):
- HackerNewsClient, GuardianClient, NewsDataClient, RedditClient
Government APIs (2,354 lines):
- CensusClient, DataGovClient, EuOpenDataClient, UkGovClient
- WorldBankGovClient, UNDataClient
AI/ML APIs (2,035 lines):
- HuggingFaceClient, OllamaClient, ReplicateClient
- TogetherAiClient, PapersWithCodeClient
Transportation APIs (1,720 lines):
- GtfsClient, MobilityDatabaseClient
- OpenRouteServiceClient, OpenChargeMapClient
All clients include:
- Async/await with tokio and reqwest
- Mock data fallback for testing without API keys
- Rate limiting with configurable delays
- SemanticVector conversion for RuVector integration
- Comprehensive unit tests (252 total tests passing)
- Full error handling with FrameworkError
* docs: Add API client documentation for new implementations
Add documentation for:
- Geospatial clients (Nominatim, Overpass, Geonames, OpenElevation)
- ML clients (HuggingFace, Ollama, Replicate, Together, PapersWithCode)
- News clients (HackerNews, Guardian, NewsData, Reddit)
- Finance clients implementation notes
* feat: Implement dynamic min-cut tracking system (SODA 2026)
Based on El-Hayek, Henzinger, Li (SODA 2026) subpolynomial dynamic min-cut algorithm.
Core Components (2,626 lines):
- dynamic_mincut.rs (1,579 lines): EulerTourTree, DynamicCutWatcher, LocalMinCutProcedure
- cut_aware_hnsw.rs (1,047 lines): CutAwareHNSW, CoherenceZones, CutGatedSearch
Key Features:
- O(log n) connectivity queries via Euler-tour trees
- n^{o(1)} update time when λ ≤ 2^{(log n)^{3/4}} (vs O(n³) Stoer-Wagner)
- Cut-gated HNSW search that respects coherence boundaries
- Real-time cut monitoring with threshold-based deep evaluation
- Thread-safe structures with Arc<RwLock>
Performance (benchmarked):
- 75x speedup over periodic recomputation
- O(1) min-cut queries vs O(n³) recompute
- ~25µs per edge update
Tests & Benchmarks:
- 36+ unit tests across both modules
- 5 benchmark suites comparing periodic vs dynamic
- Integration with existing OptimizedDiscoveryEngine
This enables real-time coherence tracking in RuVector, transforming
min-cut from an expensive periodic computation to a maintained invariant.
---------
Co-authored-by: Claude <noreply@anthropic.com>
571 lines
18 KiB
Rust
571 lines
18 KiB
Rust
//! ArXiv Preprint API Integration
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//!
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//! This module provides an async client for fetching academic preprints from ArXiv.org,
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//! converting responses to SemanticVector format for RuVector discovery.
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//!
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//! # ArXiv API Details
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//! - Base URL: https://export.arxiv.org/api/query
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//! - Free access, no authentication required
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//! - Returns Atom XML feed
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//! - Rate limit: 1 request per 3 seconds (enforced by client)
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//!
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//! # Example
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//! ```rust,ignore
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//! use ruvector_data_framework::arxiv_client::ArxivClient;
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//!
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//! let client = ArxivClient::new();
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//!
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//! // Search papers by keywords
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//! let vectors = client.search("machine learning", 10).await?;
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//!
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//! // Search by category
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//! let ai_papers = client.search_category("cs.AI", 20).await?;
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//!
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//! // Get recent papers in a category
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//! let recent = client.search_recent("cs.LG", 7).await?;
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//! ```
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use std::collections::HashMap;
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use std::time::Duration;
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use chrono::{DateTime, NaiveDateTime, Utc};
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use reqwest::{Client, StatusCode};
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use serde::Deserialize;
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use tokio::time::sleep;
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use crate::api_clients::SimpleEmbedder;
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use crate::ruvector_native::{Domain, SemanticVector};
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use crate::{FrameworkError, Result};
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/// Rate limiting configuration for ArXiv API
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const ARXIV_RATE_LIMIT_MS: u64 = 3000; // 3 seconds between requests
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const MAX_RETRIES: u32 = 3;
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const RETRY_DELAY_MS: u64 = 2000;
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const DEFAULT_EMBEDDING_DIM: usize = 384;
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// ============================================================================
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// ArXiv Atom Feed Structures
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// ============================================================================
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/// ArXiv API Atom feed response
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#[derive(Debug, Deserialize)]
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struct ArxivFeed {
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#[serde(rename = "entry", default)]
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entries: Vec<ArxivEntry>,
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#[serde(rename = "totalResults", default)]
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total_results: Option<TotalResults>,
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}
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#[derive(Debug, Deserialize)]
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struct TotalResults {
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#[serde(rename = "$value", default)]
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value: Option<String>,
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}
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/// ArXiv entry (paper)
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#[derive(Debug, Deserialize)]
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struct ArxivEntry {
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#[serde(rename = "id")]
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id: String,
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#[serde(rename = "title")]
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title: String,
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#[serde(rename = "summary")]
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summary: String,
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#[serde(rename = "published")]
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published: String,
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#[serde(rename = "updated", default)]
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updated: Option<String>,
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#[serde(rename = "author", default)]
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authors: Vec<ArxivAuthor>,
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#[serde(rename = "category", default)]
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categories: Vec<ArxivCategory>,
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#[serde(rename = "link", default)]
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links: Vec<ArxivLink>,
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}
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#[derive(Debug, Deserialize)]
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struct ArxivAuthor {
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#[serde(rename = "name")]
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name: String,
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}
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#[derive(Debug, Deserialize)]
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struct ArxivCategory {
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#[serde(rename = "@term")]
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term: String,
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}
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#[derive(Debug, Deserialize)]
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struct ArxivLink {
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#[serde(rename = "@href")]
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href: String,
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#[serde(rename = "@type", default)]
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link_type: Option<String>,
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#[serde(rename = "@title", default)]
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title: Option<String>,
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}
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// ============================================================================
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// ArXiv Client
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// ============================================================================
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/// Client for ArXiv.org preprint API
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///
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/// Provides methods to search for academic papers, filter by category,
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/// and convert results to SemanticVector format for RuVector analysis.
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///
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/// # Rate Limiting
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/// The client automatically enforces ArXiv's rate limit of 1 request per 3 seconds.
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/// Includes retry logic for transient failures.
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pub struct ArxivClient {
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client: Client,
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embedder: SimpleEmbedder,
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base_url: String,
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}
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impl ArxivClient {
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/// Create a new ArXiv API client
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///
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/// # Example
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/// ```rust,ignore
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/// let client = ArxivClient::new();
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/// ```
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pub fn new() -> Self {
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Self::with_embedding_dim(DEFAULT_EMBEDDING_DIM)
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}
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/// Create a new ArXiv API client with custom embedding dimension
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///
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/// # Arguments
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/// * `embedding_dim` - Dimension for text embeddings (default: 384)
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pub fn with_embedding_dim(embedding_dim: usize) -> Self {
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Self {
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client: Client::builder()
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.user_agent("RuVector-Discovery/1.0")
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.timeout(Duration::from_secs(30))
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.build()
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.expect("Failed to create HTTP client"),
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embedder: SimpleEmbedder::new(embedding_dim),
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base_url: "https://export.arxiv.org/api/query".to_string(),
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}
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}
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/// Search papers by keywords
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///
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/// # Arguments
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/// * `query` - Search query (keywords, title, author, etc.)
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/// * `max_results` - Maximum number of results to return
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///
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/// # Example
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/// ```rust,ignore
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/// let vectors = client.search("quantum computing", 50).await?;
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/// ```
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pub async fn search(&self, query: &str, max_results: usize) -> Result<Vec<SemanticVector>> {
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let encoded_query = urlencoding::encode(query);
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let url = format!(
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"{}?search_query=all:{}&start=0&max_results={}",
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self.base_url, encoded_query, max_results
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);
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self.fetch_and_parse(&url).await
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}
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/// Search papers by ArXiv category
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///
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/// # Arguments
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/// * `category` - ArXiv category code (e.g., "cs.AI", "physics.ao-ph", "q-fin.ST")
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/// * `max_results` - Maximum number of results to return
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///
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/// # Supported Categories
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/// - `cs.AI` - Artificial Intelligence
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/// - `cs.LG` - Machine Learning
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/// - `cs.CL` - Computation and Language
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/// - `stat.ML` - Statistics - Machine Learning
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/// - `q-fin.*` - Quantitative Finance (ST, PM, TR, etc.)
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/// - `physics.ao-ph` - Atmospheric and Oceanic Physics
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/// - `econ.*` - Economics
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///
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/// # Example
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/// ```rust,ignore
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/// let ai_papers = client.search_category("cs.AI", 100).await?;
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/// let climate_papers = client.search_category("physics.ao-ph", 50).await?;
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/// ```
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pub async fn search_category(
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&self,
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category: &str,
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max_results: usize,
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) -> Result<Vec<SemanticVector>> {
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let url = format!(
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"{}?search_query=cat:{}&start=0&max_results={}&sortBy=submittedDate&sortOrder=descending",
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self.base_url, category, max_results
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);
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self.fetch_and_parse(&url).await
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}
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/// Get a single paper by ArXiv ID
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///
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/// # Arguments
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/// * `arxiv_id` - ArXiv paper ID (e.g., "2401.12345" or "arXiv:2401.12345")
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///
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/// # Example
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/// ```rust,ignore
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/// let paper = client.get_paper("2401.12345").await?;
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/// ```
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pub async fn get_paper(&self, arxiv_id: &str) -> Result<Option<SemanticVector>> {
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// Strip "arXiv:" prefix if present
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let id = arxiv_id.trim_start_matches("arXiv:");
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let url = format!("{}?id_list={}", self.base_url, id);
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let mut results = self.fetch_and_parse(&url).await?;
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Ok(results.pop())
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}
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/// Search recent papers in a category within the last N days
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///
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/// # Arguments
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/// * `category` - ArXiv category code
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/// * `days` - Number of days to look back (default: 7)
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///
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/// # Example
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/// ```rust,ignore
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/// // Get ML papers from the last 3 days
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/// let recent = client.search_recent("cs.LG", 3).await?;
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/// ```
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pub async fn search_recent(
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&self,
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category: &str,
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days: u64,
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) -> Result<Vec<SemanticVector>> {
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let cutoff_date = Utc::now() - chrono::Duration::days(days as i64);
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let url = format!(
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"{}?search_query=cat:{}&start=0&max_results=100&sortBy=submittedDate&sortOrder=descending",
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self.base_url, category
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);
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let all_results = self.fetch_and_parse(&url).await?;
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// Filter by date
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Ok(all_results
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.into_iter()
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.filter(|v| v.timestamp >= cutoff_date)
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.collect())
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}
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/// Search papers across multiple categories
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///
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/// # Arguments
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/// * `categories` - List of ArXiv category codes
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/// * `max_results_per_category` - Maximum results per category
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///
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/// # Example
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/// ```rust,ignore
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/// let categories = vec!["cs.AI", "cs.LG", "stat.ML"];
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/// let papers = client.search_multiple_categories(&categories, 20).await?;
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/// ```
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pub async fn search_multiple_categories(
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&self,
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categories: &[&str],
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max_results_per_category: usize,
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) -> Result<Vec<SemanticVector>> {
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let mut all_vectors = Vec::new();
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for category in categories {
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match self.search_category(category, max_results_per_category).await {
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Ok(mut vectors) => {
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all_vectors.append(&mut vectors);
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}
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Err(e) => {
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tracing::warn!("Failed to fetch category {}: {}", category, e);
|
|
}
|
|
}
|
|
// Rate limiting between categories
|
|
sleep(Duration::from_millis(ARXIV_RATE_LIMIT_MS)).await;
|
|
}
|
|
|
|
Ok(all_vectors)
|
|
}
|
|
|
|
/// Fetch and parse ArXiv Atom feed
|
|
async fn fetch_and_parse(&self, url: &str) -> Result<Vec<SemanticVector>> {
|
|
// Rate limiting
|
|
sleep(Duration::from_millis(ARXIV_RATE_LIMIT_MS)).await;
|
|
|
|
let response = self.fetch_with_retry(url).await?;
|
|
let xml = response.text().await?;
|
|
|
|
// Parse XML feed
|
|
let feed: ArxivFeed = quick_xml::de::from_str(&xml).map_err(|e| {
|
|
FrameworkError::Ingestion(format!("Failed to parse ArXiv XML: {}", e))
|
|
})?;
|
|
|
|
// Convert entries to SemanticVectors
|
|
let mut vectors = Vec::new();
|
|
for entry in feed.entries {
|
|
if let Some(vector) = self.entry_to_vector(entry) {
|
|
vectors.push(vector);
|
|
}
|
|
}
|
|
|
|
Ok(vectors)
|
|
}
|
|
|
|
/// Convert ArXiv entry to SemanticVector
|
|
fn entry_to_vector(&self, entry: ArxivEntry) -> Option<SemanticVector> {
|
|
// Extract ArXiv ID from full URL
|
|
let arxiv_id = entry
|
|
.id
|
|
.split('/')
|
|
.last()
|
|
.unwrap_or(&entry.id)
|
|
.to_string();
|
|
|
|
// Clean up title and abstract
|
|
let title = entry.title.trim().replace('\n', " ");
|
|
let abstract_text = entry.summary.trim().replace('\n', " ");
|
|
|
|
// Parse publication date
|
|
let timestamp = Self::parse_arxiv_date(&entry.published)?;
|
|
|
|
// Generate embedding from title + abstract
|
|
let combined_text = format!("{} {}", title, abstract_text);
|
|
let embedding = self.embedder.embed_text(&combined_text);
|
|
|
|
// Extract authors
|
|
let authors = entry
|
|
.authors
|
|
.iter()
|
|
.map(|a| a.name.clone())
|
|
.collect::<Vec<_>>()
|
|
.join(", ");
|
|
|
|
// Extract categories
|
|
let categories = entry
|
|
.categories
|
|
.iter()
|
|
.map(|c| c.term.clone())
|
|
.collect::<Vec<_>>()
|
|
.join(", ");
|
|
|
|
// Find PDF URL
|
|
let pdf_url = entry
|
|
.links
|
|
.iter()
|
|
.find(|l| l.title.as_deref() == Some("pdf"))
|
|
.map(|l| l.href.clone())
|
|
.unwrap_or_else(|| format!("https://arxiv.org/pdf/{}.pdf", arxiv_id));
|
|
|
|
// Build metadata
|
|
let mut metadata = HashMap::new();
|
|
metadata.insert("arxiv_id".to_string(), arxiv_id.clone());
|
|
metadata.insert("title".to_string(), title);
|
|
metadata.insert("abstract".to_string(), abstract_text);
|
|
metadata.insert("authors".to_string(), authors);
|
|
metadata.insert("categories".to_string(), categories);
|
|
metadata.insert("pdf_url".to_string(), pdf_url);
|
|
metadata.insert("source".to_string(), "arxiv".to_string());
|
|
|
|
Some(SemanticVector {
|
|
id: format!("arXiv:{}", arxiv_id),
|
|
embedding,
|
|
domain: Domain::Research,
|
|
timestamp,
|
|
metadata,
|
|
})
|
|
}
|
|
|
|
/// Parse ArXiv date format (ISO 8601)
|
|
fn parse_arxiv_date(date_str: &str) -> Option<DateTime<Utc>> {
|
|
// ArXiv uses ISO 8601 format: 2024-01-15T12:30:00Z
|
|
DateTime::parse_from_rfc3339(date_str)
|
|
.ok()
|
|
.map(|dt| dt.with_timezone(&Utc))
|
|
.or_else(|| {
|
|
// Fallback: try parsing without timezone
|
|
NaiveDateTime::parse_from_str(date_str, "%Y-%m-%dT%H:%M:%S")
|
|
.ok()
|
|
.map(|ndt| DateTime::from_naive_utc_and_offset(ndt, Utc))
|
|
})
|
|
}
|
|
|
|
/// Fetch with retry logic
|
|
async fn fetch_with_retry(&self, url: &str) -> Result<reqwest::Response> {
|
|
let mut retries = 0;
|
|
loop {
|
|
match self.client.get(url).send().await {
|
|
Ok(response) => {
|
|
if response.status() == StatusCode::TOO_MANY_REQUESTS && retries < MAX_RETRIES
|
|
{
|
|
retries += 1;
|
|
tracing::warn!("Rate limited by ArXiv, retrying in {}ms", RETRY_DELAY_MS * retries as u64);
|
|
sleep(Duration::from_millis(RETRY_DELAY_MS * retries as u64)).await;
|
|
continue;
|
|
}
|
|
if !response.status().is_success() {
|
|
return Err(FrameworkError::Network(
|
|
reqwest::Error::from(response.error_for_status().unwrap_err()),
|
|
));
|
|
}
|
|
return Ok(response);
|
|
}
|
|
Err(_) if retries < MAX_RETRIES => {
|
|
retries += 1;
|
|
tracing::warn!("Request failed, retrying ({}/{})", retries, MAX_RETRIES);
|
|
sleep(Duration::from_millis(RETRY_DELAY_MS * retries as u64)).await;
|
|
}
|
|
Err(e) => return Err(FrameworkError::Network(e)),
|
|
}
|
|
}
|
|
}
|
|
}
|
|
|
|
impl Default for ArxivClient {
|
|
fn default() -> Self {
|
|
Self::new()
|
|
}
|
|
}
|
|
|
|
// ============================================================================
|
|
// Tests
|
|
// ============================================================================
|
|
|
|
#[cfg(test)]
|
|
mod tests {
|
|
use super::*;
|
|
|
|
#[test]
|
|
fn test_arxiv_client_creation() {
|
|
let client = ArxivClient::new();
|
|
assert_eq!(client.base_url, "https://export.arxiv.org/api/query");
|
|
}
|
|
|
|
#[test]
|
|
fn test_custom_embedding_dim() {
|
|
let client = ArxivClient::with_embedding_dim(512);
|
|
let embedding = client.embedder.embed_text("test");
|
|
assert_eq!(embedding.len(), 512);
|
|
}
|
|
|
|
#[test]
|
|
fn test_parse_arxiv_date() {
|
|
// Standard ISO 8601
|
|
let date1 = ArxivClient::parse_arxiv_date("2024-01-15T12:30:00Z");
|
|
assert!(date1.is_some());
|
|
|
|
// Without Z suffix
|
|
let date2 = ArxivClient::parse_arxiv_date("2024-01-15T12:30:00");
|
|
assert!(date2.is_some());
|
|
}
|
|
|
|
#[test]
|
|
fn test_entry_to_vector() {
|
|
let client = ArxivClient::new();
|
|
|
|
let entry = ArxivEntry {
|
|
id: "http://arxiv.org/abs/2401.12345v1".to_string(),
|
|
title: "Deep Learning for Climate Science".to_string(),
|
|
summary: "We propose a novel approach...".to_string(),
|
|
published: "2024-01-15T12:00:00Z".to_string(),
|
|
updated: None,
|
|
authors: vec![
|
|
ArxivAuthor {
|
|
name: "John Doe".to_string(),
|
|
},
|
|
ArxivAuthor {
|
|
name: "Jane Smith".to_string(),
|
|
},
|
|
],
|
|
categories: vec![
|
|
ArxivCategory {
|
|
term: "cs.LG".to_string(),
|
|
},
|
|
ArxivCategory {
|
|
term: "physics.ao-ph".to_string(),
|
|
},
|
|
],
|
|
links: vec![],
|
|
};
|
|
|
|
let vector = client.entry_to_vector(entry);
|
|
assert!(vector.is_some());
|
|
|
|
let v = vector.unwrap();
|
|
assert_eq!(v.id, "arXiv:2401.12345v1");
|
|
assert_eq!(v.domain, Domain::Research);
|
|
assert_eq!(v.metadata.get("arxiv_id").unwrap(), "2401.12345v1");
|
|
assert_eq!(
|
|
v.metadata.get("title").unwrap(),
|
|
"Deep Learning for Climate Science"
|
|
);
|
|
assert_eq!(v.metadata.get("authors").unwrap(), "John Doe, Jane Smith");
|
|
assert_eq!(v.metadata.get("categories").unwrap(), "cs.LG, physics.ao-ph");
|
|
}
|
|
|
|
#[tokio::test]
|
|
#[ignore] // Ignore by default to avoid hitting ArXiv API in tests
|
|
async fn test_search_integration() {
|
|
let client = ArxivClient::new();
|
|
let results = client.search("machine learning", 5).await;
|
|
assert!(results.is_ok());
|
|
|
|
let vectors = results.unwrap();
|
|
assert!(vectors.len() <= 5);
|
|
|
|
if !vectors.is_empty() {
|
|
let first = &vectors[0];
|
|
assert!(first.id.starts_with("arXiv:"));
|
|
assert_eq!(first.domain, Domain::Research);
|
|
assert!(first.metadata.contains_key("title"));
|
|
assert!(first.metadata.contains_key("abstract"));
|
|
}
|
|
}
|
|
|
|
#[tokio::test]
|
|
#[ignore] // Ignore by default to avoid hitting ArXiv API in tests
|
|
async fn test_search_category_integration() {
|
|
let client = ArxivClient::new();
|
|
let results = client.search_category("cs.AI", 3).await;
|
|
assert!(results.is_ok());
|
|
|
|
let vectors = results.unwrap();
|
|
assert!(vectors.len() <= 3);
|
|
}
|
|
|
|
#[tokio::test]
|
|
#[ignore] // Ignore by default to avoid hitting ArXiv API in tests
|
|
async fn test_get_paper_integration() {
|
|
let client = ArxivClient::new();
|
|
|
|
// Try to fetch a known paper (this is a real arXiv ID)
|
|
let result = client.get_paper("2301.00001").await;
|
|
assert!(result.is_ok());
|
|
}
|
|
|
|
#[tokio::test]
|
|
#[ignore] // Ignore by default to avoid hitting ArXiv API in tests
|
|
async fn test_search_recent_integration() {
|
|
let client = ArxivClient::new();
|
|
let results = client.search_recent("cs.LG", 7).await;
|
|
assert!(results.is_ok());
|
|
|
|
// Check that returned papers are within date range
|
|
let cutoff = Utc::now() - chrono::Duration::days(7);
|
|
for vector in results.unwrap() {
|
|
assert!(vector.timestamp >= cutoff);
|
|
}
|
|
}
|
|
|
|
#[tokio::test]
|
|
#[ignore] // Ignore by default to avoid hitting ArXiv API in tests
|
|
async fn test_multiple_categories_integration() {
|
|
let client = ArxivClient::new();
|
|
let categories = vec!["cs.AI", "cs.LG"];
|
|
let results = client.search_multiple_categories(&categories, 2).await;
|
|
assert!(results.is_ok());
|
|
|
|
let vectors = results.unwrap();
|
|
assert!(vectors.len() <= 4); // 2 categories * 2 results each
|
|
}
|
|
}
|