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New RVDNA binary format (.rvdna) purpose-built for AI genomic analysis: - 2-bit nucleotide encoding (4x compression vs ASCII FASTA) - Pre-computed k-mer vectors with int8 quantization for instant HNSW search - Sparse attention matrices in COO format for direct tensor consumption - Variant probability tensors with f16 genotype likelihoods - Zero-copy memory-mappable with 64-byte aligned sections - CRC32 checksums, section-level integrity verification Real human gene sequences from NCBI RefSeq: - HBB (hemoglobin beta, NM_000518.5) - sickle cell gene - TP53 (tumor suppressor, NM_000546.6) - exons 5-8 hotspot - BRCA1 (DNA repair, NM_007294.4) - exon 11 fragment - CYP2D6 (drug metabolism, NM_000106.6) - pharmacogenomic - INS (insulin, NM_000207.3) - preproinsulin Pipeline upgraded to 8 stages using real data: 1. Load 5 real human genes (2,340 bp total) 2. K-mer similarity matrix across gene panel 3. Smith-Waterman alignment on HBB 4. Sickle cell variant detection at HBB codon 6 5. HBB → hemoglobin beta translation (MVHLTPEEKSAVTALWGKVN verified) 6. Horvath epigenetic clock 7. CYP2D6 *4/*10 pharmacogenomics 8. RVDNA format conversion with pre-computed vectors 87 tests, 0 failures. ADR-013 documents the format specification. https://claude.ai/code/session_013B6stXbYwAkWHbE16sjUrq |
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| agentic-jujutsu | ||
| apify | ||
| benchmarks | ||
| data | ||
| delta-behavior | ||
| dna | ||
| docs | ||
| edge | ||
| edge-full/pkg | ||
| edge-net | ||
| exo-ai-2025 | ||
| google-cloud | ||
| graph | ||
| meta-cognition-spiking-neural-network | ||
| mincut | ||
| neural-trader | ||
| nodejs | ||
| onnx-embeddings | ||
| onnx-embeddings-wasm | ||
| prime-radiant | ||
| refrag-pipeline | ||
| rust | ||
| ruvLLM | ||
| scipix | ||
| spiking-network | ||
| subpolynomial-time | ||
| ultra-low-latency-sim | ||
| vibecast-7sense | ||
| vwm-viewer | ||
| wasm/ios | ||
| wasm-react | ||
| wasm-vanilla | ||
| bounded_instance_demo.rs | ||
| README.md | ||
RuVector Examples
Comprehensive examples demonstrating RuVector's capabilities across multiple platforms and use cases.
Directory Structure
examples/
├── rust/ # Rust SDK examples
├── nodejs/ # Node.js SDK examples
├── graph/ # Graph database features
├── wasm-react/ # React + WebAssembly integration
├── wasm-vanilla/ # Vanilla JS + WebAssembly
├── agentic-jujutsu/ # AI agent version control
├── exo-ai-2025/ # Advanced cognitive substrate
├── refrag-pipeline/ # Document processing pipeline
└── docs/ # Additional documentation
Quick Start by Platform
Rust
cd rust
cargo run --example basic_usage
cargo run --example advanced_features
cargo run --example agenticdb_demo
Node.js
cd nodejs
npm install
node basic_usage.js
node semantic_search.js
WebAssembly (React)
cd wasm-react
npm install
npm run dev
WebAssembly (Vanilla)
cd wasm-vanilla
# Open index.html in browser
Example Categories
| Category | Directory | Description |
|---|---|---|
| Core API | rust/basic_usage.rs |
Vector DB fundamentals |
| Batch Ops | rust/batch_operations.rs |
High-throughput ingestion |
| RAG Pipeline | rust/rag_pipeline.rs |
Retrieval-Augmented Generation |
| Advanced | rust/advanced_features.rs |
Hypergraphs, neural hashing |
| AgenticDB | rust/agenticdb_demo.rs |
AI agent memory system |
| GNN | rust/gnn_example.rs |
Graph Neural Networks |
| Graph | graph/ |
Cypher queries, clustering |
| Node.js | nodejs/ |
JavaScript integration |
| WASM React | wasm-react/ |
Modern React apps |
| WASM Vanilla | wasm-vanilla/ |
Browser without framework |
| Agentic Jujutsu | agentic-jujutsu/ |
Multi-agent version control |
| EXO-AI 2025 | exo-ai-2025/ |
Cognitive substrate research |
| Refrag | refrag-pipeline/ |
Document fragmentation |
Feature Highlights
Vector Database Core
- High-performance similarity search
- Multiple distance metrics (Cosine, Euclidean, Dot Product)
- Metadata filtering
- Batch operations
Advanced Features
- Hypergraph Index: Multi-entity relationships
- Temporal Hypergraph: Time-aware relationships
- Causal Memory: Cause-effect chains
- Learned Index: ML-optimized indexing
- Neural Hash: Locality-sensitive hashing
- Topological Analysis: Persistent homology
AgenticDB
- Reflexion episodes (self-critique)
- Skill library (consolidated patterns)
- Causal memory (hypergraph relationships)
- Learning sessions (RL training data)
- Vector embeddings (core storage)
EXO-AI Cognitive Substrate
- exo-core: IIT consciousness, thermodynamics
- exo-temporal: Causal memory coordination
- exo-hypergraph: Topological structures
- exo-manifold: Continuous deformation
- exo-exotic: 10 cutting-edge experiments
- exo-wasm: Browser deployment
- exo-federation: Distributed consensus
- exo-node: Native bindings
- exo-backend-classical: Classical compute
Running Benchmarks
# Rust benchmarks
cargo bench --example advanced_features
# Refrag pipeline benchmarks
cd refrag-pipeline
cargo bench
# EXO-AI benchmarks
cd exo-ai-2025
cargo bench
Related Documentation
License
MIT OR Apache-2.0