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https://github.com/ruvnet/RuVector.git
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9641c470e9
Replaces the Python rvdna-bridge with a pure Rust implementation: - 7-stage pipeline: parse, QC, classification, pharma, health, compound, report - CYP2D6/CYP2C19 diplotype calling with confidence gating (Strong/Moderate/Weak/Unsupported) - 17 health variant interpretations (APOE, BRCA1/2, TP53, MTHFR, COMT, OPRM1, etc.) - Genotype normalization (case/strand insensitive, allele-sorted) - CPIC drug recommendations gated on Moderate+ confidence - Panel QC signatures with het rate metrics - MTHFR compound analysis and pain sensitivity profiling - 91 tests passing (79 lib + 12 security) Published as rvdna v0.2.0 on crates.io. Co-Authored-By: claude-flow <ruv@ruv.net>
58 lines
1.5 KiB
Rust
58 lines
1.5 KiB
Rust
//! Error types for DNA analysis operations
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use thiserror::Error;
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/// DNA analysis error types
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#[derive(Error, Debug)]
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pub enum DnaError {
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/// Invalid DNA sequence (e.g., non-ACGTN characters)
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#[error("Invalid DNA sequence: {0}")]
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InvalidSequence(String),
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/// K-mer indexing error
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#[error("K-mer index error: {0}")]
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IndexError(String),
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/// Sequence alignment error
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#[error("Alignment error: {0}")]
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AlignmentError(String),
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/// Variant calling error
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#[error("Variant calling error: {0}")]
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VariantCallError(String),
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/// Analysis pipeline error
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#[error("Pipeline error: {0}")]
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PipelineError(String),
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/// I/O error
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#[error("I/O error: {0}")]
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IoError(#[from] std::io::Error),
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/// RuVector core error
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#[error("Vector database error: {0}")]
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VectorDbError(#[from] ruvector_core::RuvectorError),
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/// Dimension mismatch
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#[error("Dimension mismatch: expected {expected}, got {actual}")]
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DimensionMismatch { expected: usize, actual: usize },
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/// Empty sequence
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#[error("Empty sequence provided")]
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EmptySequence,
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/// Invalid quality score
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#[error("Invalid quality score: {0}")]
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InvalidQuality(u8),
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/// Invalid k-mer size
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#[error("Invalid k-mer size: {0}")]
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InvalidKmerSize(usize),
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/// 23andMe file parse error
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#[error("Parse error: {0}")]
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ParseError(String),
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}
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/// Result type for DNA analysis operations
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pub type Result<T> = std::result::Result<T, DnaError>;
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