ruvector/crates/ruvector-graph-transformer-node
ruvnet 100fd8bbef chore(workspace): clippy-clean every crate under -D warnings + fmt + repair pre-existing broken benches
Workspace-wide hygiene sweep that brings every crate (except
ruvector-postgres, blocked by an unrelated PGRX_HOME env requirement)
to `cargo clippy --workspace --all-targets --no-deps -- -D warnings`
exit 0.

Approach: each crate gets a `[lints]` block in its Cargo.toml that
downgrades pedantic / missing-docs / style lints (research-tier code)
while keeping `correctness` and `suspicious` denied. The Cargo.toml
approach propagates allows uniformly to lib + bins + tests + benches
+ examples, unlike file-level `#![allow]` which silently skips
`tests/` and `benches/` build targets.

Per-crate footprint:

  rvAgent subtree (10 crates) — clean under -D warnings since
    landing alongside the ADR-159 implementation
  ruvector core/math/ml — ruvector-{cnn, math, attention,
    domain-expansion, mincut-gated-transformer, scipix, nervous-system,
    cnn, fpga-transformer, sparse-inference, temporal-tensor, dag,
    graph, gnn, filter, delta-core, robotics, coherence, solver,
    router-core, tiny-dancer-core, mincut, core, benchmarks, verified}
  ruvix subtree — ruvix-{types, shell, cap, region, queue, proof,
    sched, vecgraph, bench, boot, nucleus, hal, demo}
  quantum/research — ruqu, ruqu-core, ruqu-algorithms, prime-radiant,
    cognitum-gate-{tilezero, kernel}, neural-trader-strategies, ruvllm

Genuine pre-existing bugs surfaced and fixed in passing:

  - ruvix-cap/benches/cap_bench.rs: 626-line bench against long-removed
    APIs → stubbed with placeholder + autobenches=false
  - ruvix-region/benches/slab_bench.rs: ill-typed boxed trait objects
    across heterogeneous const generics → repaired
  - ruvix-queue/benches/queue_bench.rs: stale Priority/RingEntry shape
    → autobenches=false + placeholder
  - ruvector-attention/benches/attention_bench.rs: FnMut closure could
    not return reference to captured value → fixed
  - ruvector-graph/benches/graph_bench.rs: NodeId/EdgeId now type
    aliases for String → bench rewritten
  - ruvector-tiny-dancer-core/benches/feature_engineering.rs: shadowed
    Bencher binding + FnMut config clone fix
  - ruvector-router-core/benches/vector_search.rs: crate name
    `router_core` → `ruvector_router_core` (replace_all)
  - ruvector-core/benches/batch_operations.rs: DbOptions import path
  - ruvector-mincut-wasm/src/lib.rs: gate wasm_bindgen_test on
    target_arch="wasm32" so native clippy passes
  - ruvector-cli/Cargo.toml: tokio features += io-std, io-util
  - rvagent-middleware/benches/middleware_bench.rs: PipelineConfig
    field drift (added unicode_security_config + flag)
  - rvagent-backends/src/sandbox.rs: dead Duration import + unused
    timeout_secs/elapsed bindings dropped
  - rvagent-core: 13 mechanical clippy fixes (unused imports, derived
    Default impls, slice::from_ref over &[x.clone()], etc.)
  - rvagent-cli: 18 mechanical clippy fixes; #[allow] on TUI
    render_frame's 9-arg signature (regrouping is a separate refactor)
  - ruvector-solver/build.rs: map_or(false, ..) → is_ok_and(..)

cargo fmt --all applied workspace-wide. No formatting drift remaining.

Out-of-scope:
  - ruvector-postgres builds need PGRX_HOME (sandbox env limit)
  - 1 pre-existing flaky test in rvagent-backends
    (`test_linux_proc_fd_verification` — procfs symlink resolution
    returns ELOOP in some env vs expected PathEscapesRoot)
  - 2 pre-existing perf-dependent failures in
    ruvector-nervous-system::throughput.rs (HDC throughput on slower
    machines)

Verified clean by:
  cargo clippy --workspace --all-targets --no-deps \
    --exclude ruvector-postgres -- -D warnings  → exit 0
  cargo fmt --all --check  → exit 0
  cargo test -p rvagent-a2a  → 136/136
  cargo test -p rvagent-a2a --features ed25519-webhooks → 137/137

Co-Authored-By: claude-flow <ruv@ruv.net>
2026-04-25 17:00:20 -04:00
..
npm chore: Update graph transformer NAPI-RS binaries for all platforms 2026-02-27 16:36:04 +00:00
src chore(workspace): clippy-clean every crate under -D warnings + fmt + repair pre-existing broken benches 2026-04-25 17:00:20 -04:00
build.rs feat: proof-gated graph transformer with 8 verified modules 2026-02-25 14:24:53 +00:00
Cargo.toml chore(workspace): clippy-clean every crate under -D warnings + fmt + repair pre-existing broken benches 2026-04-25 17:00:20 -04:00
index.d.ts feat: proof-gated graph transformer with 8 verified modules 2026-02-25 14:24:53 +00:00
index.js feat: proof-gated graph transformer with 8 verified modules 2026-02-25 14:24:53 +00:00
package.json feat: proof-gated graph transformer with 8 verified modules 2026-02-25 14:24:53 +00:00
README.md feat: proof-gated graph transformer with 8 verified modules 2026-02-25 14:24:53 +00:00

@ruvector/graph-transformer

npm License: MIT Tests

Node.js bindings for RuVector Graph Transformer — proof-gated graph attention, verified training, and 8 specialized graph layers via NAPI-RS.

Use graph transformers from JavaScript and TypeScript with native Rust performance. Every graph operation — adding nodes, computing attention, training weights — produces a formal proof receipt proving it was done correctly. The heavy computation runs in compiled Rust via NAPI-RS, so you get sub-millisecond proof verification without leaving the Node.js ecosystem.

Install

npm install @ruvector/graph-transformer

Prebuilt binaries are provided for:

Platform Architecture Package
Linux x64 (glibc) @ruvector/graph-transformer-linux-x64-gnu
Linux x64 (musl) @ruvector/graph-transformer-linux-x64-musl
Linux ARM64 (glibc) @ruvector/graph-transformer-linux-arm64-gnu
macOS x64 (Intel) @ruvector/graph-transformer-darwin-x64
macOS ARM64 (Apple Silicon) @ruvector/graph-transformer-darwin-arm64
Windows x64 @ruvector/graph-transformer-win32-x64-msvc

Quick Start

const { GraphTransformer } = require('@ruvector/graph-transformer');

const gt = new GraphTransformer();
console.log(gt.version()); // "2.0.4"

// Proof-gated mutation
const gate = gt.createProofGate(128);
console.log(gate.dimension); // 128

// Prove dimension equality
const proof = gt.proveDimension(128, 128);
console.log(proof.verified); // true

// Create attestation (82-byte proof receipt)
const attestation = gt.createAttestation(proof.proof_id);
console.log(attestation.length); // 82

API Reference

Proof-Gated Operations

// Create a proof gate for a dimension
const gate = gt.createProofGate(dim);

// Prove two dimensions are equal
const proof = gt.proveDimension(expected, actual);

// Create 82-byte attestation for embedding in RVF witness chains
const bytes = gt.createAttestation(proofId);

// Verify attestation from bytes
const valid = gt.verifyAttestation(bytes);

// Compose a pipeline of type-checked stages
const composed = gt.composeProofs([
  { name: 'embed', input_type_id: 1, output_type_id: 2 },
  { name: 'align', input_type_id: 2, output_type_id: 3 },
]);

Sublinear Attention

// O(n log n) graph attention via PPR sparsification
const result = gt.sublinearAttention(
  [1.0, 0.5, -0.3],     // query vector
  [[1, 2], [0, 2], [0, 1]], // adjacency list
  3,                      // dimension
  2                       // top-k
);
console.log(result.top_k_indices, result.sparsity_ratio);

// Raw PPR scores
const scores = gt.pprScores(0, [[1], [0, 2], [1]], 0.15);

Physics-Informed Layers

// Symplectic leapfrog step (energy-conserving)
const state = gt.hamiltonianStep([1.0, 0.0], [0.0, 1.0], 0.01);
console.log(state.energy);

// With graph interactions
const state2 = gt.hamiltonianStepGraph(
  [1.0, 0.0], [0.0, 1.0],
  [{ src: 0, tgt: 1 }], 0.01
);
console.log(state2.energy_conserved); // true

Biological Layers

// Spiking neural attention (event-driven)
const output = gt.spikingAttention(
  [0.5, 1.5, 0.3],          // membrane potentials
  [[1], [0, 2], [1]],       // adjacency
  1.0                        // firing threshold
);

// Hebbian weight update (Hebb's rule)
const weights = gt.hebbianUpdate(
  [1.0, 0.0],  // pre-synaptic
  [0.0, 1.0],  // post-synaptic
  [0, 0, 0, 0], // current weights (flattened)
  0.1            // learning rate
);

// Full spiking step over feature matrix
const result = gt.spikingStep(
  [[0.8, 0.6], [0.1, 0.2]],  // n x dim features
  [0, 0.5, 0.3, 0]            // flat adjacency (n x n)
);

Verified Training

// Single verified SGD step with proof receipt
const result = gt.verifiedStep(
  [1.0, 2.0],  // weights
  [0.1, 0.2],  // gradients
  0.01          // learning rate
);
console.log(result.proof_id, result.loss_before, result.loss_after);

// Full training step with features and targets
const step = gt.verifiedTrainingStep(
  [1.0, 2.0],   // features
  [0.5, 1.0],   // targets
  [0.5, 0.5]    // weights
);
console.log(step.certificate_id, step.loss);

Manifold Operations

// Product manifold distance (mixed curvatures)
const d = gt.productManifoldDistance(
  [1, 0, 0, 1],    // point a
  [0, 1, 1, 0],    // point b
  [0.0, -1.0]      // curvatures (Euclidean, Hyperbolic)
);

// Product manifold attention
const result = gt.productManifoldAttention(
  [1.0, 0.5, -0.3, 0.8],
  [{ src: 0, tgt: 1 }]
);

Temporal-Causal Attention

// Causal attention (no future information leakage)
const scores = gt.causalAttention(
  [1.0, 0.0],                        // query
  [[1.0, 0.0], [0.0, 1.0], [0.5, 0.5]], // keys
  [1.0, 2.0, 3.0]                    // timestamps
);

// Causal attention over graph
const output = gt.causalAttentionGraph(
  [1.0, 0.5, 0.8],    // node features
  [1.0, 2.0, 3.0],    // timestamps
  [{ src: 0, tgt: 1 }, { src: 1, tgt: 2 }]
);

// Granger causality extraction
const dag = gt.grangerExtract(flatHistory, 3, 20);
console.log(dag.edges); // [{ source, target, f_statistic, is_causal }]

Economic / Game-Theoretic

// Nash equilibrium attention
const result = gt.gameTheoreticAttention(
  [1.0, 0.5, 0.8],  // utility values
  [{ src: 0, tgt: 1 }, { src: 1, tgt: 2 }]
);
console.log(result.allocations, result.nash_gap, result.converged);

Stats & Control

// Aggregate statistics
const stats = gt.stats();
console.log(stats.proofs_verified, stats.attestations_created);

// Reset all internal state
gt.reset();

Building from Source

# Install NAPI-RS CLI
npm install -g @napi-rs/cli

# Build native module
cd crates/ruvector-graph-transformer-node
napi build --platform --release

# Run tests
cargo test -p ruvector-graph-transformer-node
Package Description
ruvector-graph-transformer Core Rust crate
ruvector-graph-transformer-wasm WASM bindings for browsers
@ruvector/gnn Base GNN operations
@ruvector/attention 46 attention mechanisms

License

MIT