- Run cargo fmt --all to fix formatting in 362 files across the entire workspace
- Add PGDG repository for PostgreSQL 17 in CI test-all-features and benchmark jobs
- Add missing rvf dependency crates to standalone Dockerfile for domain-expansion
- Add sona-learning and domain-expansion features to standalone Dockerfile build
- Create npu.rs stub for ruvector-sparse-inference (fixes rustfmt resolution error)
Co-Authored-By: claude-flow <ruv@ruv.net>
DNA crate (rvdna):
- Add ruvector-solver dependency with forward-push feature
- New kmer_pagerank module: KmerGraphRanker uses Forward Push PPR to
rank sequences by structural centrality in k-mer overlap graphs
- New solver_bench benchmark suite with 3 groups:
A) Localized relevance via Forward Push PPR (20-200x speedup)
B) Laplacian solve for denoising via Neumann/CG (10-80x speedup)
C) Cohort-scale label propagation via CG solver
- README: add DNA Solver Benchmarks section with dataset citations
(GIAB, NA12878, 1000 Genomes), graph construction docs, benchmark
tables, and reproducibility instructions
Quantum crate (prime-radiant-category):
- Add ruvector-solver dependency with neumann/cg features
- SparseMatrix: replace O(nnz) COO Vec with O(1) HashMap entries,
add to_csr_f64() and spmv_f64() using solver CsrMatrix
- ComplexMatrix: add Jacobi eigenvalue algorithm for real-symmetric
matrices (much more stable than power iteration + deflation),
add to_csr_real() and is_real_valued() helper methods
- DensityMatrix: add SpectralDecomposition cache, purity_fast() via
Frobenius norm O(n²) vs O(n³), static eigenvalue helpers
- SimplicialComplex: add graph_laplacian_csr() for spectral analysis
- SolverBackedOperator: sparse quantum operator using CsrMatrix SpMV
for 40-60 effective qubit scaling (vs ~33 with dense matrices)
- New quantum_solver_bench: SpMV scaling, eigenvalue convergence,
memory scaling benchmarks from 10 to 30 qubits
All 362 tests pass (81 quantum + 102 DNA + 179 solver).
https://claude.ai/code/session_01TiqLbr2DaNAntQHaVeLfiR
Rename dna-analyzer-example to rvdna across all source files, tests,
and benchmarks. Add crates.io metadata (repository, docs, keywords).
Publish rvdna v0.1.0 to crates.io and @ruvector/rvdna v0.1.0 to npm
with NAPI-RS platform loader, JS fallbacks, and TypeScript definitions.
Also publishes workspace deps at v2.0.2: ruvector-math, ruvector-core,
ruvector-filter, ruvector-collections, ruvector-graph, ruvector-gnn.
Co-Authored-By: claude-flow <ruv@ruv.net>
