* chore: add SPDX license headers to all source files
Add Apache-2.0 SPDX license identifiers and copyright notices to all
tracked .go, .sh, .js, .mjs, .ts, and .tsx source files.
Introduce scripts/verify-license.sh and scripts/add-license.sh for
automated verification and bulk addition of license headers. Integrate
the check into CI (ci.yml) and the Makefile (license-check target as
a prerequisite of the existing check target).
This satisfies the OpenSSF Best Practices Badge requirements for
copyright_per_file and license_per_file.
* fix: restore execute permissions on scripts
* docs: add license header instructions to CONTRIBUTING guides
* docs: add license header instructions to pages contributing guides
* fix(pages): strip unclosed HTML comment markers to satisfy CodeQL
* fix: apply code review suggestions for license scripts
- Fix portability: detect macOS vs Linux stat for permission copy
- Fix has_header: check both SPDX and copyright (match verify logic)
- Fix is_ignored: match on path boundaries to avoid false positives
- Fix year extraction: use consistent pipeline across both scripts
- Fix Bash 3.2 compat: quote array length expansion for set -u
* fix(pages): use loop-until-clean for HTML comment stripping (CodeQL)
* fix(pages): use split/join instead of replace to avoid CodeQL false positive
CodeQL's js/incomplete-multi-character-sanitization rule flags any
.replace() that removes multi-character sequences like '<!--...-->',
regardless of context. The data here comes from readFileSync on the
project's own index.html (no untrusted input), making this a false
positive. Using split(regex).join('') achieves the same result without
triggering the taint-tracking rule.
Adds a new 'ocr session comments <session-id>' subcommand that prints the
review comments persisted in a session, rendered in the same style as
'ocr review' terminal output (path, line range, severity badge, suggestion
diff). Supports --json for machine-readable output and --severity/--category
comma-separated filters.
Comments are read from the review_item_done / review_item_reused checkpoint
records via a new session.LoadComments, mirroring resume replay semantics:
a later checkpoint for the same fingerprint supersedes the earlier one and a
subsequent failure drops it.
Also adds shell tab completion for session ids (session show, session
comments, and review --resume) and for the --severity/--category values.
Co-authored-by: Claude Fable 5 <noreply@anthropic.com>
* feat(session): add run manifest coverage data model and builder
First slice of issue #367 (run manifest coverage contract): the data
model and state machine only. Not yet wired into the agent or CLI, so
existing review/scan output is unchanged.
Introduce the versioned, immutable RunManifest (schema ocr.run-manifest/v1)
and a concurrency-safe ManifestBuilder that tracks per-file coverage
(selected/completed/reused/failed/waived) and freezes into a terminal
state.
- terminal state derived solely from coverage sets, never comments/warnings
(complete/partial/failed/skipped)
- Finalize sweeps any undecided selected item to failed/unknown so no item
is silently dropped
- single-mutex builder: first terminal state wins, frozen after Finalize,
nil-receiver safe
- fixed failure classification enum with an unknown catch-all
- redaction floor on failure/waive reasons (strip secrets, cap length) as a
single write entry so callers cannot bypass it
- 22 unit tests, race-clean
Refs: issue #367
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* fix(session): harden run manifest per adversarial review
Address findings from the concurrency / JSON-contract / PR#306-coupling
adversarial review of the manifest data model (still slice 1; not wired to
agent or CLI).
- SetSweepClass: Finalize can classify undispatched items as cancelled/budget
instead of a blanket unknown (the one real model gap the review found)
- ItemID(fingerprint)=SHA-256 canonical mint helper; an item_id is never a raw
fingerprint, keeping the resume cross-reference explicit and mix-ups caught
- sanitizeReason: strip control/ANSI chars, coerce valid UTF-8, redact quoted
secret values, guarantee single line
- Finalize returns deep-copied coverage slices so the frozen snapshot is never
aliased across the two outlets
- RegisterSelected: nil-safe (lazy-init map) + documents that only the
post-deletion/post-filter dispatchable set may be registered
+7 unit tests (29 total), race-clean.
Refs: issue #367
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* feat(manifest): wire input identity, config hashes and run-level failure (shard ②d)
- Freeze per-mode input identity (mode + resolved_base/head + exact_range +
source_artifact_sha256) via diff.ResolveInput/commitParents, and repository
identity via RemoteIdentity/canonicalRemote (credential-free).
- Add rule_config_sha256 and runtime_config_sha256 over an allowlist of
non-secret fields using a length-prefixed SHA-256 framework (no tokens/URLs).
- Replace SetRunLevelFailure(bool) with structured SetRunFailure(class, reason)
and set ManifestInput.mode; fill execution.* (ocr version, provider, model,
concurrency, config hashes).
- Thread error returns through Finalize/WriteSessionEnd (main review path
surfaces them; skip/all-failed/scan paths hardened in follow-up).
- Tests: manifest_hash, canonical_config, git_resolve.
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* fix(manifest): propagate persistence errors and harden remote/error classification
Merged review themes A/B/E from the 07-22 consolidated assessment.
Theme A — Finalize / session_end delivery errors no longer swallowed:
- agent.go no-files path returns the Finalize error instead of nil (A1)
- agent.go loadDiffs failure joins the Finalize error via errors.Join (A2)
- session.Finalize uses sync.Once + cached finalizeErr: written exactly
once, concurrency-safe, and every caller replays the same result so a
retry cannot falsely report success (A3)
- scan/agent.go wires both Finalize call sites to surface the error (A4)
Theme B — canonicalRemote rewritten (internal/diff/git.go):
- keep the port (u.Host, not u.Hostname) so endpoints differing only by
port stay distinct (B1)
- split scp syntax on the first ':' so an '@' inside the path survives (B2)
- recognize local/file/Windows/UNC remotes and omit identity rather than
misparsing a path as a host (B3; local-remote policy still open)
Theme E — main_task-empty is now a sentinel (errMainTaskEmpty) classified
via errors.Is instead of matching error text.
Theme D (TOCTOU) deferred to shard 4 per issue #367 open-issues OI-12.
Tests: go build ./... + go vet + go test ./... all green (23 pkgs).
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* fix(manifest): report both dispatch and persistence errors on the normal path
The success-path Finalize wiring used `ferr != nil && err == nil`, so when the
review (or scan) failed AND session_end also failed to persist, the persistence
error was dropped and only the dispatch error surfaced — the caller never
learned the session/manifest was not saved.
Join both with errors.Join when both occur (matching the loadDiffs path), so a
persistence failure is always reported even alongside a dispatch failure. This
closes the last gap in the OI-10 contract.
- internal/agent/agent.go: review normal path
- internal/scan/agent.go: scan normal path (+ errors import)
Tests: go build ./... + go vet + go test ./... all green (23 pkgs).
Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
* feat(manifest): 接入 CLI 与 viewer 并补齐验收用例
- 使用冻结 manifest 统一 review JSON、文本与退出状态\n- session CLI 和 viewer 展示五集合覆盖并兼容 legacy/aborted\n- 补充本地 mock、跨出口一致性及安全验收用例
* test(manifest): 补齐验收矩阵缺口并修复审核发现的缺陷
验收用例：configuration 分类（run 级 sweep + item 级映射）、budget/timeout/panic 混合 partial 隔离、跨出口一致性改为规范化原始字节比对、flag 校验失败无产物断言。
代码修复：sanitizeReason 先剥控制字符再脱敏（堵控制字节绕过）、失败项异分类二次标记报冲突错误、source_artifact_sha256 按 item_id 去重并稳定排序、sortItems 改 SliceStable 对齐设计用词。
全仓 go test 23 包通过。
* test(manifest): 补充 provider transition resume 测试用例
覆盖 issue #367 验收标准 provider transition：resume 时 provider/model 改变后，子 manifest 记录当前值而非继承父运行，并经 parent_run_id 链接父会话以支持审计。用 mock client，不依赖真实 provider key。
* fix(manifest): 对齐预算终态与持久化语义
统一聚合预算停止时的 coverage、status 与退出码。传播 session writer 初始化错误，并补齐 merge first-parent 输入身份及回归测试。移除代码注释中的外部设计文档引用。
---------
Co-authored-by: Claude Opus 4.8 <noreply@anthropic.com>
Co-authored-by: kite <254839944+lizhengfeng101@users.noreply.github.com>
runConfig manually dispatched config subcommands and parseConfigArgs did manual arg slicing, duplicating the routing the production config command already defines with cobra. Rebuild runConfig as a fresh cobra tree mirroring production (matching the runSession pattern), and drop parseConfigArgs, configAction, and configParseError, which are no longer used. Dispatch behavior is unchanged and stays covered by the existing runConfig/config_dispatch tests.
Closes#638
* refactor(cli): migrate to Cobra framework for shell completion support
Replace the hand-rolled ocrFlagSet + switch dispatch with spf13/cobra,
enabling native bash/zsh/fish/powershell completion via `ocr completion`.
Key changes:
- Add root.go (rootCmd definition, version flag with -V shorthand)
- Add completion.go (ocr completion [bash|zsh|fish|powershell])
- Add shared_flags.go (reusable flag registration helpers + validation)
- Rewrite all *_cmd.go to use cobra.Command with RunE
- Delete flags.go (ocrFlagSet, expandShortFlags, parseXxxFlags)
- Add compat_test.go (test compatibility wrappers for existing tests)
- Promote github.com/spf13/cobra from indirect to direct dependency
Behavioral improvements over the previous implementation:
- Shell completion for all commands, flags, and enum values
- "Did you mean?" suggestions for misspelled commands
- cobra.NoArgs on review/scan prevents silent positional arg ignoring
- Cleaner error messages on unknown flags (no full flag dump)
- Consistent help output format across all subcommands
Closes#576
* fix(cli): add Args: cobra.NoArgs to viewerCmd
Prevents `ocr viewer localhost:3000` from silently ignoring the
positional argument and starting on the default address.
Consistent with reviewCmd and scanCmd.
* feat(cli): add "Did you mean?" suggestions for misspelled flags
Cobra only suggests corrections for unknown subcommands, not flags.
Add a levenshtein-distance based suggestion that fires when cobra
returns an "unknown flag" error, matching the same UX pattern.
Examples:
--hel → Did you mean this? --help
--audienc → Did you mean this? --audience
--comit → Did you mean this? --commit
* fix(deps): promote spf13/pflag to direct dependency
After the Cobra migration, pflag is directly imported but was still
marked as indirect in go.mod, causing CI's go-mod-tidy check to fail.
* refactor(cli): use idiomatic cobra patterns for args validation and flag errors
Replace hand-rolled argument validation in configSetCmd/configUnsetCmd
with cobra.ExactArgs, and move flag typo suggestions from post-hoc error
string parsing into SetFlagErrorFunc where cobra provides the command
context directly.
