deer-flow/backend/tests/test_persistence_migrations_env.py
AnoobFeng debb0fd161
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feat(persistence): wire alembic migrations, bootstrap schema on startup (#3706)
* feat(persistence): wire alembic migrations + bootstrap schema on startup

Closes #3682. Pre-#3658 DBs lack the `runs.token_usage_by_model` column
because alembic was never wired up — startup only ran `create_all`,
which never ALTERs existing tables.

Adds a hybrid bootstrap in FastAPI lifespan (replaces bare `create_all`):
- empty DB     → create_all + stamp head
- legacy DB    → stamp 0001_baseline + upgrade head
- versioned DB → upgrade head

Concurrency: Postgres `pg_advisory_lock` (cross-process); SQLite
per-engine `asyncio.Lock` + 30s `PRAGMA busy_timeout` on both prod and
alembic engines. Column revisions use `safe_add_column` /
`safe_drop_column` idempotent helpers as fallback.

Other bits:
- 0001 baseline (chain root) + 0002 add `runs.token_usage_by_model`
- `include_object` filter so alembic ignores LangGraph checkpointer tables
- `make migrate-rev MSG="..."` for authoring new revisions
  (no migrate/stamp targets — startup is the only execution path)
- Tests: three-branch decision, concurrency, #3682 regression, env
  filter, blocking-IO gate anchor
- CLAUDE.md: new "Schema migrations" section

* fix(style): fix lint error

* perf(persistence): address review feedback on alembic bootstrap

Behavioural fixes
- _SQLITE_LOCKS now keyed via WeakKeyDictionary so id-reuse after GC
  cannot return a stale, loop-bound lock and the cache cannot leak one
  entry per disposed engine.
- safe_add_column compares nullable / server_default against the desired
  column when the name already exists and emits a warning on drift,
  surfacing manual-ALTER workarounds instead of silently no-op'ing.
- _postgres_lock issues SET LOCAL idle_in_transaction_session_timeout=0
  before pg_advisory_lock, so managed Postgres cannot kill the idle
  lock-holding session mid-upgrade and silently release the advisory
  lock.
- legacy branch now backfills missing baseline tables via a restricted
  create_all (Base.metadata.create_all scoped to _BASELINE_TABLE_NAMES).
  Restores pre-#1930 upgraders whose channel_* tables were never
  provisioned, without pre-empting future create_table revisions for
  newly-added models.

Schema parity
- runs.token_usage_by_model gains server_default=text("'{}'") in both
  the ORM model and the 0001_baseline create_table, matching what 0002
  adds via ALTER. create_all and alembic-upgrade paths now produce
  identical column definitions.
- New parity test compares Base.metadata.create_all output against a
  pure alembic upgrade base->head, asserting column-set, nullable, and
  server_default agree across all tables (normalized through the same
  helper safe_add_column's drift check uses).

Guards
- test_baseline_table_names_constant_matches_0001 pins
  _BASELINE_TABLE_NAMES to 0001_baseline.upgrade()'s actual output --
  the constant cannot drift silently when someone edits 0001.
- test_legacy_backfill_skips_non_baseline_tables verifies the restricted
  backfill does not create a phantom table on Base.metadata, modelling
  a future revision that would otherwise collide on op.create_table.

Doc residuals
- Three-branch decision table is now consistent across bootstrap.py
  top docstring, engine.py comment, test module docstring, and
  CLAUDE.md.
- Stale test anchor in blocking_io/test_persistence_engine_sqlite.py
  docstring now points at the real file.

* fix(style): fix lint error

* fix(persistence): close drift detection holes

- _check_column_drift compares column type via a family equivalence
  allowlist ({JSON, JSONB}). Catches the wrong-type workaround
  `TEXT NOT NULL DEFAULT '{}'` that previously slipped through silently,
  while keeping Postgres JSON/JSONB dialect reflection quiet. Reflected
  and desired type are also echoed in every drift warning's payload for
  operator triage.

- Extract _escape_url_for_alembic so bootstrap._alembic_safe_url and
  scripts/_autogen_revision share the ConfigParser % escape rule
  instead of duplicating it.

- backend/README.md: add `make migrate-rev MSG=...` to Commands and a
  Schema Migrations section per the repo's README/CLAUDE.md sync policy.

- test_base_to_dict.py: scope the test ORM class to an isolated MetaData
  so the create_all-vs-alembic parity test (added in the previous
  commit) is not polluted by the phantom table on the full pytest
  session.
2026-06-24 13:57:12 +08:00

91 lines
3.7 KiB
Python

"""Tests for the ``include_object`` filter used by ``migrations/env.py``.
LangGraph checkpointer tables (``checkpoints`` and friends) live alongside
DeerFlow's own tables in the same database. Alembic must NEVER emit DDL for
them or a future ``alembic revision --autogenerate`` would propose
``drop_table('checkpoints')`` whenever LangGraph's tables are reflected from
a live DB.
The filter is the only line of defence between an honest autogenerate run
and a destructive revision. It lives in ``_env_filters.py`` so it can be unit
tested without alembic's import-time machinery.
"""
from __future__ import annotations
import sqlalchemy as sa
from deerflow.persistence.migrations._env_filters import (
LANGGRAPH_OWNED_TABLES,
include_object,
)
def _table(name: str) -> sa.Table:
return sa.Table(name, sa.MetaData())
def test_filter_excludes_langgraph_checkpoint_tables() -> None:
for owned in (
"checkpoints",
"checkpoint_blobs",
"checkpoint_writes",
"checkpoint_migrations",
):
assert include_object(_table(owned), owned, "table", True, None) is False
def test_filter_includes_deerflow_tables() -> None:
for owned in ("runs", "threads_meta", "feedback", "users", "channel_connections"):
assert include_object(_table(owned), owned, "table", True, None) is True
def test_filter_excludes_indexes_on_langgraph_tables() -> None:
# An Index whose parent table is LangGraph-owned must also be filtered out;
# otherwise autogenerate would emit drop_index against tables alembic does
# not own.
md = sa.MetaData()
parent = sa.Table("checkpoints", md, sa.Column("id", sa.Integer, primary_key=True))
idx = sa.Index("ix_checkpoints_anything", parent.c.id)
assert include_object(idx, idx.name, "index", True, None) is False
def test_filter_includes_indexes_on_deerflow_tables() -> None:
md = sa.MetaData()
parent = sa.Table("runs", md, sa.Column("run_id", sa.String, primary_key=True))
idx = sa.Index("ix_runs_something", parent.c.run_id)
assert include_object(idx, idx.name, "index", True, None) is True
def test_langgraph_owned_tables_set_is_complete() -> None:
# Pin the explicit set so an inadvertent removal -- e.g. someone simplifying
# the filter -- requires a test diff that surfaces the change.
assert LANGGRAPH_OWNED_TABLES == frozenset(
{
"checkpoints",
"checkpoint_blobs",
"checkpoint_writes",
"checkpoint_migrations",
}
)
def test_env_module_wires_busy_timeout_for_sqlite() -> None:
"""Regression for the cross-process bootstrap pitfall: alembic spawns its
own engine inside ``env.py::run_migrations_online`` and that engine does
NOT inherit PRAGMAs from the production engine. Without an event listener
here, its connections would use the default 5s busy_timeout and racy
multi-process bootstrap would fail with ``database is locked`` instead of
waiting for the file lock.
We check the source rather than execute env.py (which would try to drive
alembic on import) so this test stays a pure parity check.
"""
from pathlib import Path # noqa: PLC0415
env_path = Path(__file__).resolve().parents[1] / "packages/harness/deerflow/persistence/migrations/env.py"
src = env_path.read_text(encoding="utf-8")
assert "PRAGMA busy_timeout=30000" in src or "PRAGMA busy_timeout = 30000" in src, (
"env.py must set busy_timeout on its alembic-spawned engine; without it, cross-process bootstrap on SQLite fails fast instead of waiting for the file lock"
)
assert 'listens_for(connectable.sync_engine, "connect")' in src, "busy_timeout must be wired via an event listener so EVERY connection alembic opens gets the PRAGMA, not just one initial probe"