Raise notification toasts and Bootstrap tooltips above normal and legacy modal overlays while keeping confirmation dialogs on top.
Remove the duplicate tooltip CSS block and add a focused regression for the layer ordering contract.
Load startup vendor scripts with defer and serve Bootstrap locally so the first WebUI mount no longer depends on a parser-blocking CDN request.
Add a focused regression that rejects undeferred classic startup scripts in index.html and documents the vendor/startup contract.
Rework the welcome screen around the shared new-chat composer, renewed quick actions, discovery cards, OAuth accounts, and dedicated system resources panel.
Restore static button colors and neutral surfaces, move microphone state feedback onto the icon, and keep Rubik/code-font composer behavior.
Add focused static regressions for the welcome composer, OAuth discovery panel, and speech button contract.
Ensure native browser controls use the shared Rubik font token so Firefox no longer falls back to its UI font in form elements.\n\nImport Rubik on the login page and document the WebUI font contract, keeping mono aliases reserved for code and fixed-width data.
Add comprehensive file-level DOX documentation across the repo and update directory AGENTS.md indexes. Many new `*.py.dox.md` files were added under api, helpers, tools, plugins, extensions, webui, and other dirs to document endpoint purpose, ownership, runtime contracts, work guidance, and verification. Several AGENTS.md files were created or updated (agents profiles, api, docker, extensions, helpers, plugins, skills, webui components, etc.) to list child DOX files and clarify documentation/work guidance. Also add example and bundled profile DOX files (agent0, default, developer, hacker, researcher) and minor updates to helpers/dirty_json.py and its tests. These changes improve on-disk documentation coverage and establish the convention that each direct runtime file should have a matching `*.dox.md` describing its contracts and verification steps.
Introduce DOX (AGENTS.md) contracts across the repository to formalize ownership and local work contracts: adds .github/AGENTS.md plus AGENTS.md files for agents, api, conf, docker, docs, extensions, helpers, knowledge, lib, plugins, prompts, scripts, skills, tests, tools, usr, webui (and several subfolders). Update root AGENTS.md (content and last-updated date) to include DOX framework guidance and a child DOX index. Update .gitignore to allow usr/ and usr/plugins AGENTS.md files. Remove legacy deep-dive files under docs/agents (banners, components, modals, plugins) and migrate frontend/plugin references to webui/ and plugins/ DOX locations. Also adjust plugins/README.md and several skills/*/SKILL.md files to align with the new DOX layout.
